LOCUS NC_076441 2442 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken smacovirus mg4_964, complete genome.
ACCESSION NC_076441
VERSION NC_076441.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken smacovirus mg4_964
ORGANISM Chicken smacovirus mg4_964
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus;
Porprismacovirus chicas6.
REFERENCE 1 (bases 1 to 2442)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2442)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2442)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379621.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2442
/organism="Chicken smacovirus mg4_964"
/mol_type="genomic DNA"
/isolate="mg4_964"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720960"
/country="USA"
/collection_date="2017"
gene 1..804
/locus_tag="QKO14_gp1"
/db_xref="GeneID:80536586"
CDS 1..804
/locus_tag="QKO14_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798402.1"
/db_xref="GeneID:80536586"
/translation="MKTYMLTIPRTVPKRAIRIMLEVNDCKKWIIGKETGHGGYEHWQ
VRLQTSNDSFFEWTKLYIPTAHVEEAQDKWEYERKEGKYWASWDTTDVRKQRFGKPQA
WQRTALERLRTQNDRQVDVWYDPIGNRGKSWLAGHLFETGKACIVPRDWTNPSEITNY
LVHNYQDEGIIVIDIPRETGIPKGFYATVEMIKDGLIGTTKWEGRMRNIRGVKIMIMT
NHMMDLKKLSKDRWRLYGINAQNALNGAPRRANAPEDQLGQEGVGGPLS"
gene complement(1234..2358)
/locus_tag="QKO14_gp2"
/db_xref="GeneID:80536585"
CDS complement(1234..2358)
/locus_tag="QKO14_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798403.1"
/db_xref="GeneID:80536585"
/translation="MDIESVLLTDTGLVLAEGPHTGTGVTGDYMVVVRVSETYDLSTK
IGKMGLVGIHTPTGDLISRMWPGLILQHKKFRFVECDVAMACASMLPADPLQVGVEAG
SIAPQDMFNPILYKAVSNESMNQFQAWLNIVYQTNGLTGAFNKGSVVDVNDPNFVGPT
GTPEYDQFSMYYALLSDSDGWRKAMPQAGLEMRGLYPLVFQVVSQFGSGPENSASDAD
ANISVPSLSVGADDKSPTSKLGSVSSIPNRTMRGPSMRMPAIDTTFFTTNTSTDTALV
PANINVDTSLDKVPPAYVGMIVLPPAKQNQLYYRLKVTWTIEFTGLRSAVDISNWYNL
ETIGKLAYGSDYEAQSSKMSAKTGMVDTDGSDITKIMEGS"
ORIGIN
1 atgaaaacgt acatgttgac gattccgagg acggtaccaa agcgggcaat caggatcatg
61 ctggaagtga acgactgcaa gaagtggata atcggaaagg agactggaca cggaggttac
121 gagcactggc aggtaaggct acaaacgtca aacgattcat tcttcgaatg gacaaaattg
181 tacattccaa cggcacacgt ggaggaagct caggacaaat gggagtacga gaggaaggag
241 ggtaagtact gggcatcatg ggacacgacc gacgtaagga agcagagatt cgggaaaccg
301 caggcatggc aaagaaccgc tctagaacgg ctcaggacgc aaaacgatag gcaggtggat
361 gtttggtatg acccgatagg caatcgtggc aaatcgtggc tagcagggca cctattcgag
421 acgggtaaag catgtatcgt accgagggat tggacgaacc cgagcgagat aacaaactac
481 ttggttcaca actaccaaga cgagggcata attgtaatcg acataccgag agaaacagga
541 atcccgaagg ggttctatgc gacggtggag atgattaagg acgggctgat aggcacgacc
601 aaatgggagg gcaggatgcg caacatccgc ggagtgaaga taatgatcat gaccaaccac
661 atgatggacc tgaagaagct cagcaaggac agatggaggc tatacggcat aaatgcacaa
721 aatgctctca acggcgctcc gcgcagggct aacgcccctg aggaccaact tggacaagag
781 ggggtgggag gtcccttatc gtaacactat cgggacctct tcccccttta gggggaaggg
841 gtttcagttg gatgggtcga tggacaagct gttcgacttg aaatcattca ccactcgatg
901 tgcagcttac caaggaacca atccttgact ttgattacca aatccaagag cttcacctat
961 acaacctcga tatattatca gatacaaaat taagcattcc agaagcagag ccataaccag
1021 aagtacgact agggtacaga atgtcatcat atccaagtcc agtattcttc atgtagtcat
1081 ccatgtaggc aatgttatca atggtcctat agtaggagtc gaggaaacca ccaatcacag
1141 gaatcccaga gagagatcca cggatgtagt atgaggtacg agcatcagga gtgatcagac
1201 cctcaccata cagaccgaat atgggacgaa ccatcagctt ccctccatga tcttggtgat
1261 atcggaacca tcagtatcaa ccatgccagt tttggcagac atcttcgagg actgagcctc
1321 atagtcggag ccataggcga gcttgccgat ggtctccaga ttgtaccagt tggagatgtc
1381 aacggcagat ctgagaccag tgaactcgat agtccaggtg accttgagac gatagtagag
1441 ctgattctgt ttggcaggag ggaggacgat catgccgacg tacgctggag ggaccttgtc
1501 cagagacgta tcgacgttga tgttggcggg tacaagagcc gtatcagtcg aagtgttggt
1561 ggtgaagaaa gtggtgtcga tcgcaggcat gcgcatagac ggaccacgca tggtacggtt
1621 aggaatgctg gagacggaac cgagcttgga agtaggactc ttatcatcag ctccaacgga
1681 gagactggga acagagatgt tagcatcagc gtcactagca ctgttctcag gtccagaacc
1741 gaactgggag acgacctgga agaccagagg atagagaccg cgcatctcga gaccagcctg
1801 gggcattgcc tttctccacc cgtcagagtc ggacagaagc gcatagtaca tgctgaactg
1861 gtcatactca ggagtaccgg taggaccgac gaagttggga tcattgacat cgacgacaga
1921 acccttattg aaggcaccag tgagaccgtt ggtctggtag acaatgttaa gccaagcctg
1981 gaactgattc atagactcat tcgagacagc cttatagaga atgggattga acatgtcctg
2041 gggagcgata gaaccagcct cgacgccaac ctggagaggg tccgcaggga gcatagacgc
2101 acaagccatg gcaacatcac actcaacgaa tctgaacttc ttgtgctgaa gaatgagacc
2161 tggccacatg cgactgatga ggtcgccagt aggagtgtga attccgacaa gacccatctt
2221 accaatctta gtagagaggt cgtaggtctc agagactcta acaacgacca tgtaatcacc
2281 tgtaacgcct gtacctgtat gagggccttc tgccagaacg agtcctgtat ctgtaagcag
2341 tacgctttct atatccataa tatgccattt tttagcacct ctgcacaaca atgtgcacta
2401 atgaatgaca cggttttttt ataaaagtat cgatgacgaa gc
//
