LOCUS NC_076442 2608 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken smacovirus mg5_1081, complete genome.
ACCESSION NC_076442
VERSION NC_076442.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken smacovirus mg5_1081
ORGANISM Chicken smacovirus mg5_1081
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus;
Porprismacovirus chicas7.
REFERENCE 1 (bases 1 to 2608)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2608)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2608)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379622.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2608
/organism="Chicken smacovirus mg5_1081"
/mol_type="genomic DNA"
/isolate="mg5_1081"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720961"
/country="USA"
/collection_date="2017"
gene 1..885
/locus_tag="QKO15_gp1"
/db_xref="GeneID:80536589"
CDS 1..885
/locus_tag="QKO15_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798404.1"
/db_xref="GeneID:80536589"
/translation="MQPDEQKCTTVYKMVTLYMLTIPQTYPKRAIKLMIELNDCKKWV
VAKETGRGGYKHWQIRLATSNPEFFVLEQKKIVTNDGIEQKVTIKKGWLPKNIPEAHC
EECNDVWDYERKEGNFWTSEDTDEVRRVRFGKLRPIQRDILAQLNQQGDRQIDVWLDK
SGNHGKTWLSQHLYERGEAMVVPRSSCSPEKLSAYVCSAYRGEGIIIIDIPRSRKISP
ELYESIEELKDGLVFDHRYSGRCRNIRGVKVLIFTNTELDTKKLSHDRWRLHGISKDT
NALQGATAHPPRGPPLKG"
gene complement(963..2201)
/locus_tag="QKO15_gp2"
/db_xref="GeneID:80536588"
CDS complement(963..2201)
/locus_tag="QKO15_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798405.1"
/db_xref="GeneID:80536588"
/translation="MVNCSISEIYDLSTSVGQGTVLKVHTPTGNNVKRHLLGFFLQYK
KFKYIGADVTLVPASTLPADPLQLGYEEGEPTIDPRDMVNPILYKWYHGEAMLTDSLQ
REFPIPYGMDVTPVGGMAGGAVGQTGTSVDKQSYWNGTYDSQSDNVYPMCLMDPSFKK
AGVQSGFRTSVKPFVYNLVTNEQYLSNRNPHGGLSGTTPGWNANGPFKTDPNWFSGND
VTPFEDAVETAATGSVNLVNHVARTSDTAILFTNKLQPLGWMDTVTRVWQSEPSPSGD
PAGVVDGTSLGTYGINESLTHNSGAVGVSGSAAMQTFLPNIPMLYVMMPPAYKTLFYF
RLIIKHKFAFKDFRSCFNVQSYGSASIVPPHVLPVGYGTSTSALANEMSELVADVGTG
GPDSVTVENGEIISSADGLL"
ORIGIN
1 atgcaacctg atgaacagaa atgtactacg gtgtataaaa tggtaacgtt atatatgctt
61 acaataccgc aaacataccc aaaacgcgcg atcaagttga tgatagagct taacgactgc
121 aagaagtggg tagtcgctaa ggaaacgggc cgtggaggct acaaacattg gcagataagg
181 ctagctacct ctaaccccga gtttttcgtt ctagagcaaa agaagatagt aacaaacgac
241 ggaatagaac agaaagtaac aattaaaaaa ggatggctac ctaagaacat accagaggca
301 cattgtgagg aatgtaacga tgtttgggat tacgaaagaa aagaaggaaa tttttggacg
361 tccgaagata cagatgaagt tagaagagtg cggttcggta agcttagacc aatacaaagg
421 gatatactcg cacaactcaa ccagcaaggt gatcgtcaga ttgacgtatg gttggacaaa
481 agtggaaatc acggtaaaac gtggttatct caacatctct acgaacgcgg agaggctatg
541 gttgtcccta gatcaagttg cagtcccgag aaactcagcg catatgtatg cagtgcctac
601 agaggcgaag gcattattat catcgatatt ccaagaagta gaaaaatcag ccccgagctg
661 tacgaatcaa ttgaagagct taaagacgga cttgttttcg accatagata ctctggacgt
721 tgcagaaata tccgtggagt taaggtcttg atattcacga acaccgaact ggacaccaag
781 aaactaagcc atgacagatg gcgcctacac gggataagca aagacaccaa tgctctacag
841 ggggctaccg cccacccccc aagggggccc cccctgaaag ggtgaaccgt ggggacagta
901 tggggatagc cttatcgtaa cacttacggc tatcccccct ttagggggga taggtaatag
961 gtttagagaa gtccgtcggc ggaactgatg atctcaccgt tttcgacagt gaccgaatca
1021 ggaccgccag taccaacatc cgcgaccaac tccgacatct cgttagcgag ggcagaggtg
1081 gaggttccgt atccaacagg cagaacatgg ggaggcacaa tggaagcgct tccgtaggac
1141 tgcacgttga agcaggatct aaagtctttg aacgcgaact tgtgcttgat gatcagacgg
1201 aagtagaaca gcgtcttgta tgccgggggc atcatcacat agagcatggg gatgttaggc
1261 aggaaggtct gcattgcggc actaccacta accccaacag caccagagtt atgggtcaaa
1321 gattcattga taccataggt tccaagagaa gtaccatcaa caacaccagc aggatcacca
1381 ctaggagaag gctcagactg ccagacacgg gtaacagtat ccatccaacc aagaggctgg
1441 agcttgttcg taaacagaat agcggtatcg ctagtccttg caacgtgatt gacaagatta
1501 acggaaccag ttgcggcagt ctctacagca tcctcgaaag gagtaacatc attgccactg
1561 aaccagttag ggtcagtctt gaaaggtccg ttagcattcc aaccaggggt agtaccactg
1621 agtccgccgt gaggattcct gttggaaaga tactgctcat tggttacgag attgtaaacg
1681 aagggcttaa cactagtcct aaatccagac tgaacaccgg ccttcttgaa agacgggtcc
1741 atcagacaca tgggatagac gttatcggac tgagaatcgt aagtaccatt ccaataggac
1801 tgtttatcaa cagaagtacc agtctgtccg acagcaccgc cagccatacc accaacaggg
1861 gttacatcca ttccgtaagg aatggggaac tcacgctgga gcgaatcggt gagcatagcc
1921 tcaccatgat accatttgta gaggatgggg ttgaccatat cacgaggatc tatggtaggt
1981 tctccttcct cataaccaag ctgaagcggg tcagcgggta gagtagaagc ggggacaaga
2041 gtaacgtctg caccgatgta cttgaatttc ttgtactgca agaagaatcc gagaagatgc
2101 ctcttaacgt tgttaccagt aggggtatga accttcagaa cggtaccctg tccaacagaa
2161 gtactgagat cataaatttc cgaaatagaa caattaacca ttcaatcacc tatacatgta
2221 tttcacagga tcatagctgg agctgtaacc tggtctgctg cgataggtat tcccaagatg
2281 gtacatacca gcaacaccaa aagcagaacc cacagccttg taaagcttgg tacgggacgg
2341 atacttgacc ctgacccagg ggtatctctt gagatagtca ttaagagcac gaccttcgtt
2401 ataaatctgg aatcctttgt aaagaccata agcaccaata atccaaggaa gtaccatctt
2461 caatacctcc tgtaatacct cctacgcctg tagccatacc ttctacgcct tctatatccg
2521 taagccataa gtatcgtagc ctccaatttg tctttaatca agttgatatt cggagcgcgt
2581 gtataaactt gtacatcgta ccacggat
//
