LOCUS NC_076443 2528 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken smacovirus mg5_1212, complete genome.
ACCESSION NC_076443
VERSION NC_076443.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken smacovirus mg5_1212
ORGANISM Chicken smacovirus mg5_1212
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus;
Porprismacovirus chicas3.
REFERENCE 1 (bases 1 to 2528)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2528)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2528)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379623.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2528
/organism="Chicken smacovirus mg5_1212"
/mol_type="genomic DNA"
/isolate="mg5_1212"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720962"
/country="USA"
/collection_date="2017"
gene 1..723
/locus_tag="QKO16_gp1"
/db_xref="GeneID:80536592"
CDS 1..723
/locus_tag="QKO16_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798406.1"
/db_xref="GeneID:80536592"
/translation="METGKGGYEHWQVRLQAREGFSEWKDTEVPVLGPNWTIVTEKQK
VGVGWIQRNIPQAHVEECSDKWEYETKEGRYWASWDTVEVHRLRWGRMTWWQEGIVNR
VRATNDREVVVWYDPKGNNGKSWLVGHLFETGQAYYLPPTLTSVQSMLQTMASLAHQD
REDGRPPKEFVVIDLPRTWKWSKELYCAIESIKDGLIMDPRYSARPINIRGVKVLVLT
NEMPKLDALSEDRWIIENTPMH"
gene complement(1185..2387)
/locus_tag="QKO16_gp2"
/db_xref="GeneID:80536591"
CDS complement(1185..2387)
/locus_tag="QKO16_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798407.1"
/db_xref="GeneID:80536591"
/translation="MNSYDSLVHNIVQEYAKWHIIGLEGAPLTDTGPVRVGDPPTATG
DTGGNPMVQVRVSETYDLSTKVGKMGVVGIHTPIGSLIDKMWSGLVLQCKKFRFVKCD
VAMACASMLPADPLQIGVEAGAIAPQDMFNPILYKAVSNDTMNNFLSFIQNCAATEGT
LTAVDKGSVIDVNDFDLNYEKIVDGTQHIGQVNQFEAYYGLLASEGWRKAMPQAGLQM
TDLVPLVYQTLNQYGINQFNDASGQNIGNVFQIPIKVGADKTPVVYEHEPVQAIVSTQ
IRGPSMRMPAIDTVYFDENPTADVVPSGKAYVKSNTGLVPPAYVALLVLPPAKLNQLY
YRLKVTWTIEFTGIRPLSDIAAFTALGSIGSESYGTDYDSQSANMSSKTSMVDTDGAD
IHKIMEGS"
ORIGIN
1 atggagacgg gcaagggtgg atacgagcat tggcaagtac gccttcaggc acgcgagggg
61 ttcagcgagt ggaaggacac ggaggttcca gtgcttggac ccaattggac aatagtgacg
121 gagaagcaga aagtgggggt tggatggata cagcgcaaca ttccacaggc tcacgtggag
181 gaatgctccg acaagtggga gtacgagacc aaggaaggca ggtattgggc atcatgggac
241 accgtggagg ttcacaggct caggtggggt aggatgacat ggtggcaaga gggcatcgta
301 aaccgcgtca gagcgacgaa cgaccgcgag gtggtagttt ggtacgaccc gaagggaaac
361 aatggcaaga gctggcttgt agggcaccta ttcgagacag ggcaggccta ctatctaccg
421 ccgacgttga cgagcgtaca gagcatgttg cagaccatgg cgagcctggc gcatcaggac
481 cgtgaggacg ggagaccgcc taaggagttc gtagtgatcg atttaccgag aacgtggaag
541 tggtcaaaag agttgtactg cgcaatcgag agcataaagg acggactcat catggacccg
601 aggtacagcg cgagacctat caacatcagg ggggtcaagg tattagttct tactaacgaa
661 atgccaaagc tggacgcact gagtgaggac aggtggatta tcgaaaatac accgatgcac
721 tgaacggtgc taccgcacgg ccacagcttg ctccgcaggg cgcctaacgg cgggacacac
781 cagaggggta gtcccttatc gtaacactga cggactaccc ccctttaggg gggtaggaag
841 tagtttacca ctcaatgtgg agtttaccaa ggaaccaatc cctgacttta atgacgagat
901 ccaagagttt cacctgtaca acctcgcgat attattagac acaaagttgg taagtccact
961 cactccactg taacctacag tcatggtagg atacttgata tcatcccagg agagaccacg
1021 attacgcatg taatcctcca tgtaacgaac cttatcacgt gcagtgaaat aggcgccgat
1081 tacagggaga cctccaagaa aggactcgaa gtagtacttc tgacgaccgt caagaaaacg
1141 atctgtagta tcctcatacc agataggaaa cagcggaatt accatcagga cccctccata
1201 atcttatgga tatccgcacc atcggtatca accatagagg ttttggaaga catattcgca
1261 gactgggaat cataatcggt accgtaggac tcggacccga tggaaccaag ggcagtgaat
1321 gcggcaatgt ccgagagagg cctgataccg gtaaactcaa tggtccaggt aactttcaac
1381 ctatagtaga gctggttcag tttggcagga ggaagaacca acagagcgac atatgcggga
1441 gggacaagac cagtattgga cttgacataa gccttaccgg aaggtacgac atccgcagta
1501 ggattctcat cgaagtagac agtatcgata gcaggcatcc tcatagaggg accacgaatc
1561 tgggtagaaa cgatagcctg aacaggttca tgctcataga caacaggagt cttatcggca
1621 ccgactttga tggggatctg gaaaacatta ccgatgttct gaccagaagc atcattgaac
1681 tgattgatac catactgatt aagagtctga tagacgagag ggacaagatc agtcatctga
1741 agaccagcct gaggcatagc cttacgccaa ccctcggaag caagaagacc gtagtatgct
1801 tcgaactgat taacctgacc aatatgttgt gtaccatcga caattttctc ataattaaga
1861 tcaaaatcgt taacatcgat gaccgagccc ttatcaacag cggtaagagt accttcagta
1921 gcagcgcaat tctgaatgaa cgaaaggaaa ttgttcatag tgtcattgga gacagcctta
1981 tacagaatag gattgaacat gtcctgaggg gcaatcgctc cagcctcgac gccgatctgc
2041 agaggatcag caggcagcat ggacgcacaa gccatggcaa cgtcacactt gacaaacctg
2101 aacttcttac actggagaac cagaccagac cacatcttat cgataagaga gccgataggg
2161 gtatggatac cgacaacacc catcttgccg accttagtgg aaaggtcata ggtttccgaa
2221 acacgtacct gtaccatggg gttacctcct gtatctcctg tagccgtagg agggtctcct
2281 acccgaacgg gtcctgtatc tgtaagcggt gcgccttcta gtcctataat atgccatttt
2341 gcatactcct gcacaatatt gtgcactagt gaatcatacg agttcatata aaagcctacc
2401 gatgaccagg catgaaaaac tacatgctga caattccgag aacgagagcg gaacgcatag
2461 ggaccgagcc tatcatcagg ttgatgaggt acatcagaga gaacgacgtg aagaagtgga
2521 tagtagcc
//
