LOCUS NC_076444 2419 bp DNA circular VRL 06-MAY-2023
DEFINITION Chicken smacovirus mg7_67, complete genome.
ACCESSION NC_076444
VERSION NC_076444.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken smacovirus mg7_67
ORGANISM Chicken smacovirus mg7_67
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus;
Porprismacovirus chicas5.
REFERENCE 1 (bases 1 to 2419)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Identification of single stranded DNA viruses in chicken tracheal
swab swabs
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2419)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2419)
AUTHORS Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
and Varsani,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
Applied Microbiomics, Arizona State University, 1001 S. McAllister
Ave, Tempe, AZ 85287-5001, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MN379627.
##Assembly-Data-START##
Assembly Method :: metaSPADES v. 3.12.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2419
/organism="Chicken smacovirus mg7_67"
/mol_type="genomic DNA"
/isolate="mg7_67"
/isolation_source="tracheal swab"
/host="Gallus gallus"
/db_xref="taxon:2720966"
/country="USA"
/collection_date="2017"
gene 1..738
/locus_tag="QKO17_gp1"
/db_xref="GeneID:80536595"
CDS 1..738
/locus_tag="QKO17_gp1"
/codon_start=1
/product="replication associated protein"
/protein_id="YP_010798408.1"
/db_xref="GeneID:80536595"
/translation="MKTYMLTIPRSVPKKAIRIMIEVNDCKRWIVAKETGHGGYDHWQ
IRLQTSNDSFFEWTKLYIPTAHVEEAQDKWEYERKEGRFWTSDDRTEIRIERFGKPRG
WQETALKRLRTQNDRQVDVWYDPIGNRGKSWLAGHLFETGQACIVPRDWTNPSEICNY
LVHNYNNEPIIVIDIPRETGIPKGFYATVEMIKDGLIGTTKWEGRMRNIRGVKILILT
NHQMDLKKLSRDRWRLNGINAQNTPVL"
gene complement(1209..2345)
/locus_tag="QKO17_gp2"
/db_xref="GeneID:80536594"
CDS complement(1209..2345)
/locus_tag="QKO17_gp2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010798409.1"
/db_xref="GeneID:80536594"
/translation="MCQKWHTTTTEGAMRTGTRLALVEGPPTGTGDTEGDSMVFVKVS
ETYDLSTNVGKMGIVGIHTPKGDLITRLWGGIAMQHKYVRFHSCDVTMACASLLPADP
LQIGQEAGSIAPQDMFNPILYKAVSNESMSNIQAYLSANATDSHFGKAGSVVDINDAE
FRDGADAPVDQFKMYYSLLGNPDGFRKAMPQAGLQMRGLYPLVYQVVSNYGVNTAGTT
QTVNIGATSNSSHPLYGPAGKDGVTPLQIKSILLRGPSMRMPRVNTTYLPYNAQQNAP
LSGKANLNFGDTTRGMPPCYVALIILPPAKLNQLYYRLKVTWTIEFTDLRSLDEISNW
SGMAEIGSEAYATDYDAQSQALMSDLESMVDVGNANIQKIMEGI"
ORIGIN
1 atgaaaacct acatgctgac gatcccgaga tccgtaccga agaaggcgat caggatcatg
61 atagaggtga acgactgcaa gcgttggatc gtggccaagg agactggaca cggaggttac
121 gatcattggc agatcaggct ccaaacatca aatgattcat tcttcgaatg gacaaaattg
181 tacatcccaa cggcacacgt ggaggaagct caggacaagt gggagtacga aaggaaagag
241 ggaaggttct ggacatcgga tgacaggacg gagatcagga tcgaaagatt cggcaaacca
301 aggggatggc aagaaaccgc tctaaaacgg ctcaggacgc aaaacgatag gcaggtggat
361 gtctggtacg acccaatagg caatcgtggc aagtcgtggc tcgcagggca cctattcgag
421 acagggcagg catgcatcgt accgagggat tggacgaacc catccgagat ctgcaactac
481 ctggtccaca actacaacaa cgaaccgatc atagtgatcg acataccgag ggaaacaggg
541 atccccaagg gattctacgc aacggtggag atgatcaagg acggtctgat cgggacgacc
601 aaatgggaag ggagaatgcg caacatccgc ggagtgaaga tcctgatcct gacgaaccat
661 caaatggatc tgaagaaact atcaagggat cgctggagac tgaacggtat caatgcacag
721 aatacaccag tgctctaaac ggcgctccgc gcagggctga cgccctcggg gaccaacttg
781 gacaagaggg ggtgggaggt cccttatcgt aacacttgcg ggacctcacc cccctttagg
841 gggggtgggg gacccaaggg taaggagttt accactcaat gtggagcttg ccaaggaacc
901 aatccctgac ttttatgacg agatccaaga gcttcacctg tacaacctct cgatattcga
961 agaaacgaag ttcagtccag atccgacacc accagatccg cgcatgagcg aggggtactg
1021 aacgtcagac caagagagac cacggtttct catgtagtcg gaatagtagt tcgactgatc
1081 gaaggcacgg accacagatc cgacgaaagg aacatccgcg aagtagaact tggttttagc
1141 atagagatct tcggtagaca ttccgagcat agaagcgatt gcatcgccga cagggtccca
1201 accgaccatc aaattccctc catgatcttc tgaatgtttg catttccgac atcgaccatg
1261 gactccagat ccgacatgag agcctgggac tgagcgtcat agtcggtagc gtaggcctcg
1321 gatccaatct cggccatacc agaccaattg gaaatctcat cgagggacct aagatcagtg
1381 aactcaatag tccaagtgac cttcaagcgg tagtagagct ggttcagctt ggcaggaggg
1441 aggatgatca gggccacata gcaggggggc ataccacggg tggtatctcc gaagttcagg
1501 ttagccttac cagagagggg ggcgttctgc tgagcgttgt aagggagata ggtggtattg
1561 acacgaggca tcctcattga gggaccacgg agcaggatac tcttaatctg cagaggagtg
1621 acaccgtcct taccagcagg tccatagaga ggatgggacg agttggaggt ggcaccgata
1681 ttgacagtct gagtagtacc agcagtgttg acgccgtagt tggagacgac ctgatagacc
1741 agcggataga gaccgcgcat ctgaagacca gcctggggca tagcctttct gaaaccatca
1801 gggttaccga gcagggaata gtacatcttg aactgatcta cgggagcatc agcaccgtca
1861 cggaattcgg catcgttgat gtcgacgaca gagcccgctt taccgaaatg agagtcggta
1921 gcgttcgcag agaggtacgc ctggatgtta gacatggact cattggagac cgccttatac
1981 aagatcggat tgaacatgtc ctggggagcg atcgaaccag cttcctgacc gatctgaaga
2041 ggatcagcag ggagcaggga agcacacgcc atggtcacgt cacaggaatg gaaacggacg
2101 tacttgtgtt gcattgcgat accgccccag aggcgagtga tcagatcacc tttaggagtg
2161 tggatgccga caatacccat cttaccaacg ttggtggaca gatcgtaggt ctcagaaacc
2221 ttcacgaata ccatggaatc accttctgta tcccctgtac ctgtaggagg gccttctacc
2281 agagcgagtc ttgtacctgt acgcatagcg ccttctgttg ttgtagtatg ccatttttga
2341 cacatcctgc aactagttaa ggtagttgcg ttacaagcaa tggacgacct gatataagaa
2401 actcacagat caggggatc
//
