LOCUS NC_076565 7002 bp RNA linear VRL 05-MAY-2023
DEFINITION Paslahepevirus balayani isolate AlgSwe2012, partial genome.
ACCESSION NC_076565
VERSION NC_076565.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Paslahepevirus balayani
ORGANISM Paslahepevirus balayani
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus.
REFERENCE 1 (bases 1 to 7002)
AUTHORS Lin,J., Karlsson,M., Olofson,A.S., Belak,S., Malmsten,J.,
Dalin,A.M., Widen,F. and Norder,H.
TITLE High Prevalence of Hepatitis E Virus in Swedish Moose - A
Phylogenetic Characterization and Comparison of the Virus from
Different Regions
JOURNAL PLoS ONE 10 (4), E0122102 (2015)
PUBMED 25906163
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7002)
AUTHORS Lin,J., Norder,H., Uhlhorn,H., Belak,S. and Widen,F.
TITLE Novel hepatitis E like virus found in Swedish moose
JOURNAL J. Gen. Virol. 95 (PT 3), 557-570 (2014)
PUBMED 24296469
REFERENCE 3 (bases 1 to 7002)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 7002)
AUTHORS Lin,J., Norder,H., Uhlhorn,H., Belak,S. and Widen,F.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2015) Department of Virology, Immunobiology and
Parasitology (VIP), The National Veterinary Institute (SVA), Ulls
vag 2B, Uppsala, Uppland S-751 89, Sweden
REMARK Sequence update by submitter
REFERENCE 5 (bases 1 to 7002)
AUTHORS Lin,J., Norder,H., Uhlhorn,H., Belak,S. and Widen,F.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2013) Department of Virology, Immunobiology and
Parasitology (VIP), The National Veterinary Institute (SVA), Ulls
vag 2B, Uppsala, Uppland S-751 89, Sweden
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KF951328.
##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7002
/organism="Paslahepevirus balayani"
/mol_type="genomic RNA"
/isolate="AlgSwe2012"
/isolation_source="liver"
/host="Alces alces (moose)"
/db_xref="taxon:1678143"
/country="Sweden"
/collection_date="2012"
5'UTR <1..37
gene 38..4885
/locus_tag="QKP38_gp1"
/db_xref="GeneID:80537474"
CDS 38..4885
/locus_tag="QKP38_gp1"
/note="ORF1"
/codon_start=1
/product="putative nonstructural polyprotein"
/protein_id="YP_010799168.1"
/db_xref="GeneID:80537474"
/translation="MEAXQYVSAAAVTTAIEQSALAAATSAFANAYAVRPFLTQPQAE
QLVRLFHPQQLVFRPEVLWAHPIQRVIHDFLEGIARRKAGRCLEIGAHPRSVNENANV
LHRCFLPPTGRDVARWFGAPSRGPVANMRRSALRGAPPADRSYCFSGFASCDYACERG
LALYSLHDMPPHLVAEAMSRHGIRQLYTVLHLPMECLLPDGVYETPTYLAVVQKDTVS
VTYEGDTSAGYVHSAATLRKWVRTTRVGGRHGLVIERIRAIGCHFLLSITAVDRVSPM
PYCPYPRSADIYVRSIYGPGGRSSLFPSFTPVKSTFHAVPSNIWDRLMVFGATLDDQA
FCCSRLMTYLRGIAYKVTVGKLVANEGWAASEEALTAVIVAAYLTICHQRYIRTQAIS
KGVRRLEREHAQRFIDRLYSWLFESAGREVAPGRQLEFYAQCQRWVSAGFYIDPRKLM
FDEEDTCGCSRLAARCKRAFCCFFREIGQDCCCILGRRRPRYGQLGGQEFDNAAYEGS
EVSSCRSASPTVTPGSSIITIPESVEADAPAGAQAGVHAPAGMDRAAERAFLSSLYTV
QARLRRAGRASGPYIFYEGFISPLGFFCPSRRLMHNPFSTDXREVAASXPATPDRSRP
QXPVQRPLPQAEVPASPSAARPGPAELAVEQAGGPDGPPAGRPGPVELTAGRKSPTPS
PGIFAGAGPLRPVPTGGQPPRLLSTLPDGSRIYAGSLFYSRATWLVNAANAGHRPGGG
LCGVFYDKFPDAFDPACFVMRDGLAAYTLSPRPIIHAVAPDYRKGPNRRRLRLAYIEA
CSRVGTAAFPLLGSGIYQVPISESFDAWVDHHRPGDELYLDDRAERWFMARDRTNSLV
ITKDMAAMANMALDIDRAKPVGRGLGAARVDPGVVRYKFVAGVPGSGKSTGVRASDVD
IVVTPTRELRDGWRKRGFAAFTPHAAARVTAGRRVVLDEAPTLAPHLLLLHAQRAADV
LLLGDPQQIPALDFEGTGLVTPLRLELAPTSELNVTHRCPADVCELVRAAYPRIQTTS
TVLRSLYWGRAPVGQILVFTQAAKAIHQGSVTVHEAQGATYDKTTVIATADARGLLLS
SRAHAIVALTRHREVCHIIDEPGCLRDLGISDAIVSNFELSGGREVPNRPAEALRRIP
DPVLADADAVPASCQIAAYHQMSETFGHRPEPVAAVLPPIPELEQGRLYMAKDLAGRD
EVVTLALTETVHCRMSAPAHRKSVLSTLVGRYGRLTKLYAGHHAAVRHRLERFIPRLA
PLRPGFCELAELVQAMLDKGQDGQAVLHVDLADRDVTRITFFQKDCNKFTTGPTIQHG
KVGQGISAWSKTMCALFGPWFRSIEKQIVDSLPPTVFYADNFDPSAFSAAIQAAKSSQ
VFENDFSEFDSTQNDFSLGLECMLMRECGMYEWLVRLYYIIRSAWTLQAPKESLQGSW
KKHSGEPGTLLWNTVWNMAVIAYCYDFDNEACAAFKGDDSVVLCSGYRLTADAPRLIT
SCGLRLKAGFRPIGLYAGDVVXPGVGLLPDVIRFAGRLSEKNWGPSPERAEELRTAVV
DFLKRIENITGTCIVLCGIPYAASSGLVLNLIGLLKTIAEGRASLTELRKPLLDLTYT
EGKRE"
misc_feature 137..1078
/locus_tag="QKP38_gp1"
/note="Viral methyltransferase; Region: Vmethyltransf;
pfam01660"
/db_xref="CDD:396298"
misc_feature <1580..2170
/locus_tag="QKP38_gp1"
/note="large tegument protein UL36; Provisional; Region:
PHA03247"
/db_xref="CDD:223021"
misc_feature <1883..>2146
/locus_tag="QKP38_gp1"
/note="EBNA-3B; Provisional; Region: PHA03378"
/db_xref="CDD:223065"
misc_feature 2213..2539
/locus_tag="QKP38_gp1"
/note="X-domain (or Mac1 domain) of viral non-structural
protein 3 and related macrodomains; Region:
Macro_X_Nsp3-like; cd21557"
/db_xref="CDD:438957"
misc_feature order(2225..2233,2243..2263,2459..2464,2468..2482)
/locus_tag="QKP38_gp1"
/note="ADP-ribose binding site [chemical binding]; other
site"
/db_xref="CDD:438957"
misc_feature 2723..3361
/locus_tag="QKP38_gp1"
/note="Viral (Superfamily 1) RNA helicase; Region:
Viral_helicase1; pfam01443"
/db_xref="CDD:366646"
misc_feature 3740..4561
/locus_tag="QKP38_gp1"
/note="catalytic core domain of RNA-dependent RNA
polymerase (RdRp) in the family Hepeviridae of
positive-sense single-stranded RNA [(+)ssRNA] viruses;
Region: Hepeviridae_RdRp; cd23259"
/db_xref="CDD:438109"
misc_feature 4169..4213
/locus_tag="QKP38_gp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438109"
misc_feature 4349..4420
/locus_tag="QKP38_gp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438109"
misc_feature 4436..4480
/locus_tag="QKP38_gp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438109"
gene 4904..5251
/locus_tag="QKP38_gp2"
/db_xref="GeneID:80537472"
CDS 4904..5251
/locus_tag="QKP38_gp2"
/note="ORF3"
/codon_start=1
/product="putative accessory protein"
/protein_id="YP_010799169.1"
/db_xref="GeneID:80537472"
/translation="MCRPGCSCAFLCFCCLSYCLCSRRPPRPDLAPVEVVVGGGRAAA
EVVVGALASTRSHLPYPGSPPQTHSPAIFTNPVPRPPPVNPGHERVPSAPLGATHPTF
VRAVEVPNLEPRR"
gene 4924..6894
/locus_tag="QKP38_gp3"
/db_xref="GeneID:80537473"
CDS 4924..6894
/locus_tag="QKP38_gp3"
/note="ORF2"
/codon_start=1
/product="putative viral capsid protein"
/protein_id="YP_010799170.1"
/db_xref="GeneID:80537473"
/translation="MRVSVLLLFVLLPMLPAPAPAGSGSGRGGRRRRSGGGGGGGWGP
RLDSQPFALPWLSPSNPFASDLYQSSSQAPPSQPGSRARALGSAWRDASHLRPRGRGP
ELGATPLTAVSPAPNTTPVPDVDSKGAILRRQYNLSTSPLTSTVPAGTNLVLYAAPLS
PLLPLQDGTNTHILATEASNYAQYRMVRATVRYRPLVPNAVGGYAISISFWPQTTTTP
TSVDMNSITATDVRIVVQPGLASELVIPSERLHYRNQGWRSVETTGVPEEEATSGLVM
VCVHGAPINSYTNTPYTGALGLLDFALQVEFRNLTPGNTNSRVSRYSSTARHRLKRSS
DGTATITTTAATRFMKDIHLAGNNGIGELGRGIALTLFNIADTLLGGLPTELVSAAGG
QLFYSRPQVAENGEPTVKLYTSVENAQLDKGITIPHDIDLGESRVVIQDYDNHHEQDR
PAPSPAPSRPFNVLRSNDVLWISMTAAEYDQSVYGSSTYPVYVSSTVTLVNTGTGAIG
VVSSLRWDEVTIDGKPLKQVTSGTKTAYVIPLRGKLSYWQAGTTTAGYPYNYNNVTPD
ELRVATDAGHRFLISTYTTSLGAGPVNISGVGAVAPVPADVLEAKVSPDPTSSHSFDD
FCPTCNPLGLQGCAFQSTLAEIERLKLRVGKV"
misc_feature 5236..>5586
/locus_tag="QKP38_gp3"
/note="Viral coat protein (S domain); Region: Viral_coat;
cl29941"
/db_xref="CDD:421955"
3'UTR 6895..7002
ORIGIN
1 gaaccctgcc gatacccacc gctggcatgg gacgtacatg gaggcccmcc agtacgtctc
61 ggccgcggcc gtcacaacag cgatagagca atctgctctc gctgctgcga catctgcgtt
121 tgcgaatgct tacgcagtta ggccgttcct tacccaaccc caggccgaac agctcgtccg
181 gctgttccac ccgcagcagc tggtgtttcg tccagaggtg ctctgggccc accccattca
241 gcgggtcatc catgactttc tcgagggcat cgctcgccgc aaggccggcc ggtgcctaga
301 gatcggagcg cacccccgct ccgtgaatga aaatgccaat gtgttgcacc ggtgtttcct
361 cccacctact ggccgcgatg tggctcggtg gtttggcgcc ccctcacgcg ggcccgtcgc
421 gaacatgcgg cggtcggcat tgcgtggcgc cccgcctgcc gatcgctcat actgcttctc
481 cggatttgca tcctgtgatt atgcctgtga gcggggcttg gccctatact cactacatga
541 catgccaccg catcttgtgg cggaggcgat gtcccgccat ggcatccggc agctatacac
601 agtgcttcat ctccctatgg aatgtctgtt acctgacggg gtctatgaga ccccgacgta
661 cctcgcagtc gtccagaagg ataccgtgag tgtgacatat gaaggtgaca catctgctgg
721 ctatgtgcac tcggcggcaa ccctacgtaa gtgggtgcgc acaacccgcg tgggcggtcg
781 gcacggctta gtcattgagc gcatccgcgc tattggctgc cattttctct tgtccatcac
841 tgcagtggac cgtgtgtccc ccatgccgta ttgtccttac ccccgtagcg cggatatcta
901 tgttaggtcc atttatggcc ctggcggcag gtctagccta ttcccaagct ttacaccagt
961 gaagtcgaca tttcacgccg tcccatccaa catctgggac aggcttatgg tgtttggcgc
1021 taccctcgat gaccaggcgt tttgttgctc ccggcttatg acatacttac gaggtattgc
1081 ctacaaggtg accgttggca agcttgtcgc caacgaaggc tgggccgcct ccgaggaagc
1141 cctgaccgca gtcattgtag ccgcttacct taccatctgc catcagcgat atatccgcac
1201 ccaggccatc tccaagggtg tccgccggct tgagcgtgag catgctcagc ggtttattga
1261 ccgtctatac agttggctgt ttgagtctgc cggccgggag gtagcccccg gccgtcagct
1321 cgagttctac gcccagtgcc agcggtgggt atcggcaggg ttctacattg atccccgtaa
1381 gttgatgttc gatgaggagg acacctgcgg ctgtagccgt ttggccgccc ggtgtaagcg
1441 tgctttctgc tgttttttcc gcgagatcgg ccaggactgc tgctgcattc ttggccgccg
1501 ccggccacgt tacggccagt taggtggtca ggagtttgat aacgccgcct atgagggctc
1561 tgaggtgtca tcgtgccgct ctgctagtcc aacggtcacg cccgggtctt cgattatcac
1621 cattcctgag tctgttgagg ctgacgcccc tgccggtgca caggccggag ttcatgcccc
1681 agcaggtatg gaccgggctg cagagcgtgc tttcctttct agcctgtaca ctgtgcaggc
1741 ccggctgcgt cgtgccggcc gggctagcgg cccctacata ttttatgaag gcttcatctc
1801 accacttggc ttcttttgcc cgtcccgtcg actgatgcat aaccctttct ctactgacgm
1861 ccgcgaggtc gcggcgagtg yccccgccac gcctgaccgg agccgtcctc aamcccccgt
1921 gcagcgacca ctcccgcagg ccgaggttcc cgcctcgcca tctgctgcac ggcccggccc
1981 ggccgagcta gctgtcgagc aggccggggg cccggatggg ccgcctgccg ggcggcccgg
2041 tccagtcgag ttgaccgccg gccgtaagtc gcccacaccc tcgcccggca tctttgccgg
2101 ggccggcccg ctccgaccgg tgcctaccgg tgggcaaccc ccccgcctgc tttccacact
2161 accggacggt tcgcgcattt acgccggctc acttttctat agcagggcta cgtggcttgt
2221 caatgctgca aacgcagggc accgtccggg cggcggcctc tgcggtgtgt tttatgataa
2281 gttccctgat gcattcgatc cggcttgctt cgttatgcgt gacgggctgg ccgcgtacac
2341 tctttcgccc cggccgataa tacatgctgt tgccccggac taccgaaagg ggccgaaccg
2401 ccgccggctc cggttggcct atatcgaggc atgctcgcga gtcggcactg cggcctttcc
2461 acttcttggc tccgggatat atcaggtccc gatatcggag tcctttgacg cgtgggtgga
2521 ccatcaccga cctggcgatg agctctacct tgacgaccgc gccgagcgct ggttcatggc
2581 gcgtgaccgc acgaacagtc tggtgataac aaaagatatg gccgccatgg cgaacatggc
2641 cttggacatt gaccgcgcca agcccgtcgg ccgcggcctc ggtgccgcta gggtcgaccc
2701 tggtgtggtg cgttataaat ttgtggctgg tgtccccggt tcgggtaagt caaccggtgt
2761 acgggcgtct gatgtggaca tagttgtaac gcccacccgc gagctgcgcg atggctggcg
2821 taagcgcggg ttcgccgctt ttacacctca tgcagcggcc cgtgtaactg ctggccgccg
2881 cgttgtgctg gatgaggcgc ccaccttggc accgcacctg cttctattgc atgctcagcg
2941 tgcggcggat gtgctcctac tcggtgaccc gcagcagatc ccggcgctcg attttgaggg
3001 cactggcctg gtaaccccgc tccgcctcga gttagcgcca acgagcgagc ttaatgtgac
3061 gcaccgttgc ccggcggatg tctgcgagct agtccgtgcc gcataccccc gtatccagac
3121 tacgtccacg gttttgcggt cactttactg gggccgtgcg ccggtgggcc agattttggt
3181 ttttactcag gccgcaaagg ctatccacca agggtccgta accgttcatg aggcccaggg
3241 cgcgacttat gacaaaacca cggtcatagc gaccgcggac gcccggggcc tactactaag
3301 ctctcgggcg cacgcaattg ttgcgctgac acgacaccgc gaggtttgtc acattattga
3361 cgaaccaggc tgcctgcgtg atcttggcat ttctgatgca attgtctcca attttgagct
3421 cagcggcggc cgagaggtac caaatcgtcc cgcggaggct ttgcgccgta ttcctgatcc
3481 ggtgcttgcc gacgcggatg ccgtcccggc cagctgccag attgctgctt atcatcagat
3541 gtctgagacg ttcggtcacc gccctgaacc cgttgctgcc gtgctaccgc ccattccgga
3601 gcttgagcag ggccggttat acatggccaa ggaccttgcg ggccgcgacg aggtggtcac
3661 cttggccctc actgagactg tacactgccg gatgtccgca ccggcccatc gtaagagtgt
3721 cctatccacg ctcgtcggcc gttacggcag gctcacgaag ctctacgcag gccatcatgc
3781 tgccgttcga caccgacttg agcggttcat cccacggctg gcgccgctgc gccccgggtt
3841 ttgtgagctt gcggagctgg tccaggccat gctggataag ggccaagacg gccaggctgt
3901 tctccatgtt gacctggccg atcgggatgt cacgcgtata acttttttcc agaaggactg
3961 caacaaattt acaacaggcc ctactatcca gcatggtaag gtgggccagg gcatatcggc
4021 ttggagcaag actatgtgtg cacttttcgg gccgtggttc cgatcaattg aaaagcagat
4081 cgttgatagt ctaccaccaa cggtgtttta tgccgacaat tttgacccgt ccgcgttttc
4141 ggcagctata caggccgcta agtcatctca ggtttttgag aacgattttt ctgagtttga
4201 tagcacacag aatgactttt ccttagggct tgaatgcatg ttgatgaggg aatgtggtat
4261 gtatgagtgg ttagtacggc tttattacat cataagatca gcttggacgc tgcaggctcc
4321 gaaggagtcc ctgcagggca gttggaaaaa acattctggt gagcccggta cgttgttgtg
4381 gaacacggtc tggaatatgg ctgtgatcgc ctactgctat gattttgata acgaggcttg
4441 tgctgccttc aaaggcgatg actctgttgt gctctgcagc ggctacaggt tgactgctga
4501 cgcgcctcgc ttaattacta gctgcggcct gcgcctgaaa gccgggttcc gccctatcgg
4561 cctgtacgca ggcgatgtcg tggyccccgg agtcggatta ctgccagacg tcatacggtt
4621 cgcggggcgg ctcagcgaga agaactgggg cccgtcccct gagcgcgccg aggagttgcg
4681 gacggctgtc gttgactttc tgaagcgtat tgagaatatt actggtacct gtattgtgct
4741 gtgtggtata ccctacgccg catcatctgg cctcgtcttg aatctcattg ggctcctgaa
4801 gacaattgct gagggccggg cctcattaac cgaactgcgt aagccccttt tagatttgac
4861 ctatactgag ggtaagaggg aataacattc aggatgcgcg cgcatgtgtc gcccaggctg
4921 ctcatgcgcg tttctgtgct tctgctgttt gtcctactgc ctatgctccc ggcgcccgcc
4981 ccggccggat ctggctccgg tcgaggtggt cgtcggcggc ggtcgggcgg cggcggaggt
5041 ggtggttggg gccctcgcct cgactcgcag ccatttgccc taccctggct ctccccctca
5101 aacccattcg ccagcgatct ttaccaatcc agttcccagg ccccccccag tcaacccggg
5161 tcacgagcgc gtgccctcgg ctccgcttgg cgcgacgcat cccaccttcg tccgcgcggt
5221 cgaggtcccg aacttggagc cacgccgttg actgctgttt cgcctgcccc gaatactacg
5281 cctgtccctg atgttgattc taagggtgct attctgcgcc gacagtacaa tctgtcaaca
5341 tcacctctta cctctactgt gccggctggc acgaatcttg ttctttatgc tgcccccctg
5401 tcgccgctcc tgcccttgca ggacggtaca aacacgcata tacttgcaac tgaggcttca
5461 aattatgccc agtaccggat ggttcgcgct accgttcggt accgtccgct tgtcccgaat
5521 gccgtcggtg gttatgctat atcaatttca ttttggcccc agacaactac aacgcctaca
5581 tctgttgata tgaactccat caccgccacc gatgtccgga ttgtcgtcca gcccgggctg
5641 gcctcggagc tagtcatccc atccgagcgg ctccattacc ggaaccaagg ttggcgttcc
5701 gtcgagacca ctggggttcc cgaggaggag gctacgtctg gtctggtaat ggtctgtgtc
5761 cacggtgcac ccatcaattc ttacactaat accccgtaca ctggcgcctt gggcctgctt
5821 gactttgccc tacaggtgga gtttcgcaat ttgaccccag gcaacacaaa ctcccgtgta
5881 tcgcggtata gttcgacggc ccgacaccgc ctgaagcgct catcggacgg cactgccacc
5941 attaccacga cggcagcgac tagatttatg aaggacatcc atctcgcagg taacaacggc
6001 atcggcgagc ttggccgtgg tatcgctctg accttgttta atatcgctga cactctcctt
6061 ggcgggctcc ctactgagct tgtgtcagct gctggcgggc aactattcta ttcccgcccg
6121 caggtggctg agaatggtga gccgactgtt aagctttaca cctctgttga gaacgcgcag
6181 ctcgacaagg gtataaccat cccccacgat atcgacctgg gagagagtcg ggttgttatt
6241 caggactatg acaatcatca tgagcaggac cgtccagccc cgtcacctgc cccatcccgt
6301 ccttttaatg ttcttcgctc taatgatgtt ctttggatca gtatgaccgc agccgagtac
6361 gatcagtcag tctacgggtc atctacctac cccgtttatg tctccagcac ggtcacactt
6421 gttaacaccg gtactggtgc cattggtgtt gtgtcctcgc tgcgctggga cgaagtcaca
6481 attgacggca aaccgctgaa gcaggtcacc tccgggacca aaacagcgta tgttataccg
6541 ttacgtggca agttgtccta ttggcaggct ggcacgacga ccgccggcta tccgtacaat
6601 tataacaatg tgaccccgga tgaattgcgt gtcgcgaccg acgctggtca ccgttttctg
6661 atctccacct ataccacatc actaggtgcg ggaccggtga acatttccgg cgttggtgcc
6721 gtcgccccag ttcctgctga cgtgcttgag gctaaagtta gtcctgatcc gacaagttct
6781 cattcttttg atgacttctg cccgacctgc aacccgcttg ggctgcaggg ctgcgccttc
6841 cagtctacac ttgccgagat cgagcgtctc aaattaaggg tggggaaggt ttaggcttta
6901 ttctgtgtcc ttcctgtctc cccttttagt tattttcttt tatcttcttt atttcttttt
6961 tctgcgcttc gcycctaaaa aaaaaaaaaa aaaaaaaaaa aa
//
