LOCUS NC_076592 6660 bp RNA linear VRL 05-MAY-2023
DEFINITION Paslahepevirus balayani isolate little egret/kocsag02/2014/HUN,
complete genome.
ACCESSION NC_076592
VERSION NC_076592.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Paslahepevirus balayani
ORGANISM Paslahepevirus balayani
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus.
REFERENCE 1 (bases 1 to 6660)
AUTHORS Reuter,G., Boros,A., Matics,R., Kapusinszky,B., Delwart,E. and
Pankovics,P.
TITLE A novel avian-like hepatitis E virus in wild aquatic bird, little
egret (Egretta garzetta), in Hungary
JOURNAL Infect. Genet. Evol. 46, 74-77 (2016)
PUBMED 27876615
REFERENCE 2 (bases 1 to 6660)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6660)
AUTHORS Reuter,G. and Pankovics,P.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2016) Regional Laboratory of Virology, ANTSZ
Baranya County Institute of State Public Health Sevice, Szabadsag
u. 7., Pecs, Baranya H-7623, Hungary
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to KX589065.
##Assembly-Data-START##
Assembly Method :: GeneDoc v. 2.7
Sequencing Technology :: Illumina; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..6660
/organism="Paslahepevirus balayani"
/mol_type="genomic RNA"
/isolate="little egret/kocsag02/2014/HUN"
/isolation_source="fecal sample"
/host="Egretta garzetta (little egret)"
/db_xref="taxon:1678143"
/country="Hungary"
/collection_date="Jun-2014"
gene 19..4572
/locus_tag="QKP65_gp1"
/db_xref="GeneID:80537557"
CDS 19..4572
/locus_tag="QKP65_gp1"
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="YP_010799225.1"
/db_xref="GeneID:80537557"
/translation="MDVSPYADSKGVRTAVEAAALQAVQTSLRNAHVVTPFLTRRQTE
DLLELFGGVQLRFEPTKVWGHPVQRVVHNFLEQYVCKRAGPGALKLVRTLVASTSAKA
AHRCFLPAVGRDAQRWNTAPRRGLANYIRRAMANGVKSTREFCQLGFTVCDHPAEVGL
ALYSLQDVDPADVVCAMAKHKMNTLFAVLHLPHEALLPSGNYVSRYYRVVSAGGNLIV
TYNDDTSAGYVHNRKNILKWVEVTSVRGRHSAVFERVRSVGCHFVIQITLTDPCSMPY
TPYTTIDTLYVRNVFGPALKSSLFGPKCCSDAKFVPVPRDIWQRLMMFGTTLDDEAFC
CSRLMTYLRGISNKVVVGNVVANRGWRAEDEQLTTVIIAAYLTICHQRWVRTQGIAKG
IKRLQAEHAQTFWFRVWEFFTNRPGTVPGYSVDFYRMLASWISGGLIIDVQGKVFDLR
LRCGCCCLPNSRDSDWGILDTNGDEVEEFPHKCKEWHIRPVAAGTSVNAKQVVVRASS
EEDLIVLDHTPTGVVVPSLRELAARAIGFKSLAKPPELMAPTPGVVQRPAVVAATRDA
SICAANQLPSPAEPDPNRPPINPGRPNLSARVLLILPDGARIIVGDLFNSAAKWLVNA
ANKNHRPGGGVCGQFYRRWPQLWPVWGTSIRTSSGDVYFQRADRWVIHAPAPDARVQP
VTTEELIEVYAATAEREGNAAYPVLGSGIFGCDFMASVCAWLSTRRPEDELYIHPSDL
DRYNPQMLPPGLLGAGPPKTVEISPGAAEIANLGLTTEPDPYCRYTRGIQVQPGPITY
RFIAGVPGSGKSTSVDHTDAVVVAPTRTLVDGWVARGAVAYTPHKALSKVAGRRVIFD
EAPSVPKHLLLALIQPAAEVLLLGDPNQIPAIDFDDRMISQAIDTIFEPTEWRNITHR
CPQDVCRYISADYPGITTTSTVVRSVMFDGPIVGQKIVFTQAAKAANPGSVTVHEAQG
CTYDRVTLIATMDARGLIATSRAHAIVALTRHTKVCRVVDEGGALVDVGVTDAMFLSI
EMQLVHVRPALPARIERAHPPDPDGTPVFTAVQTDVTARLTAEVIGHQPLELAAVNPQ
CPPLEQGLLFMPERLDGKDEIVVMRLSDTVHCRVAAPTSRLAIINTLVGRYGRETKLS
EESYSVREVLAQYIPCLKPCPPTTVEYMELVQAMEDKGQTGALVLELTDDSKARFRIS
FFQKDCAKYTLDEPLCHGKVGQGISAWPKTLCHLFGPWFRSIEKQIVQNLPPGVFYGD
LYVESELHAAVMCVPPDVQVFENDFSEFDSTQNNVSLDLETLLLTEAGMPKWMVELYR
LVRQYWTLTAPKEALRGCWKKHSGEPGTLLWNTVWNMAAVSYVYDFERRYVACFKGDD
SVVLAGEVLPRPGGQSLIAGCGLKMKDKVGRIGVYSNLIVAPGVGVVKDVLRYWARLT
EKNFGPTEERMLELRDAAADFVQQVRYEGKEMLMVELCAAYYGTTRGFMEVTWQGILA
VAEGRAGLNTYRMPVLNIEGGDK"
misc_feature 145..1071
/locus_tag="QKP65_gp1"
/note="Viral methyltransferase; Region: Vmethyltransf;
pfam01660"
/db_xref="CDD:396298"
misc_feature 1876..2229
/locus_tag="QKP65_gp1"
/note="X-domain (or Mac1 domain) of viral non-structural
protein 3 and related macrodomains; Region:
Macro_X_Nsp3-like; cd21557"
/db_xref="CDD:438957"
misc_feature order(1888..1896,1906..1926,2131..2136,2140..2154,
2224..2226)
/locus_tag="QKP65_gp1"
/note="ADP-ribose binding site [chemical binding]; other
site"
/db_xref="CDD:438957"
misc_feature 2419..3054
/locus_tag="QKP65_gp1"
/note="Viral (Superfamily 1) RNA helicase; Region:
Viral_helicase1; pfam01443"
/db_xref="CDD:366646"
misc_feature 3430..4251
/locus_tag="QKP65_gp1"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature 3859..3903
/locus_tag="QKP65_gp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438017"
misc_feature order(4039..4089,4093..4110)
/locus_tag="QKP65_gp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438017"
misc_feature order(4126..4137,4141..4170)
/locus_tag="QKP65_gp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438017"
gene 4657..4995
/locus_tag="QKP65_gp2"
/db_xref="GeneID:80537555"
CDS 4657..4995
/locus_tag="QKP65_gp2"
/codon_start=1
/product="ORF3"
/protein_id="YP_010799226.1"
/db_xref="GeneID:80537555"
/translation="MFGFSQFTKQLRILNWVAAGISVLLLGIFVVLLVRCMSQKCGCL
CICFSCCCKCYQACPPAFRPEATPPAVIPAVVTQPGLHHDKDPIPTQPTAPPLLQNQP
PQWVRAQFQM"
gene 4776..6557
/locus_tag="QKP65_gp3"
/db_xref="GeneID:80537556"
CDS 4776..6557
/locus_tag="QKP65_gp3"
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="YP_010799227.1"
/db_xref="GeneID:80537556"
/translation="MWLPVHLFLLLLQMLPGVSTGVQTGGNSTRRNPRRRNAAWAAPR
QGPNTNSTYGATPLTKSATAVGTRPVPDVNQAGAVLRRQYNLVTSPLSLSITGSTNSL
LYGAPVNPLMPLQDGSTQTIMSTESSNYAQYRVKALTFRWRPVVPNAVGGFSISLAYW
PQATSMPTSVDMNSITSTDVRIVLQPGTAGELVIPSERLHYKNQGWRSVETQSVPQED
ATSGVIMVTCHGSPMNSYINQAYTGPLGMLDIAMDLELRNLSPGNTNARVTRTKVTAR
HKIQSTPGGAIIPTAAALRFMNDAKWGLASPSEGDTGHGVLGVLFNIADTILGGLPST
LLRAAGGQFMYGRPVGTANGEPAVRLYATVEDAINDRPLTVPHDIDLGDSTVVVQDYD
NQHVSDRPSPAPAPKRALGTLRVGDVLRVDMPRAQYVTNGELLPQSVAQGYITVGAVV
HNLITGVRAAANTVDWTQATVDGVPVKVVGAGSGSQHFAAIPACGKPSFWGAMGAGYF
YNYNNTHQEWLYFSQGSAQTAVAAYTNMLGNTADISFLMEVRAVTDGVPVAVAPALAV
SGPNDLSRLQRPICVDHGRLCCSICKP"
misc_feature 4827..6485
/locus_tag="QKP65_gp3"
/note="Structural protein 2; Region: SP2; pfam03014"
/db_xref="CDD:367296"
ORIGIN
1 ggggcaaccc ttgccaagat ggatgtctcg ccttatgcag actccaaggg tgttcggacg
61 gccgtagagg cggctgctct acaggctgtc cagacgtcgt tgcgaaacgc gcacgtcgta
121 acgccttttc ttactcgcag gcaaactgaa gacctgcttg agttgtttgg gggggttcag
181 ctacgatttg agccaactaa agtgtggggt catccggtgc agcgtgttgt tcacaatttc
241 cttgagcagt acgtttgtaa gcgtgctgga cctggggccc tgaaattggt gcgcaccctc
301 gtagcatcaa cgagtgcaaa agctgcacat cgttgctttt taccggctgt gggccgggat
361 gcccagcgtt ggaacacagc cccacgtcgg ggcctggcca attacataag gcgggcaatg
421 gccaatggtg ttaaatcaac cagggagttc tgtcagttag gctttaccgt gtgtgaccac
481 cccgcagaag tggggttggc cttgtatagt ttacaagatg ttgatccagc cgacgttgtt
541 tgtgccatgg ccaagcataa aatgaacacc ctttttgcgg tattgcatct acctcacgaa
601 gctctgttac cgtctggcaa ttatgtttcg aggtattacc gtgttgttag cgctgggggc
661 aatttaattg ttacctataa tgatgacact agcgcgggat atgtccacaa tcgcaagaac
721 attcttaagt gggttgaagt tacaagtgtt aggggcaggc attcggctgt gtttgagcga
781 gtccggtctg taggttgtca ttttgtgatt cagatcacgt taacagatcc ttgttctatg
841 ccatacacac cttatactac aattgacacg ttatatgtta ggaatgtgtt tgggcccgca
901 ctaaagtcat ctttgttcgg acctaagtgc tgtagtgatg ccaagtttgt cccagtcccg
961 cgagatatct ggcagcggtt gatgatgttc gggacaacct tagacgatga ggctttttgc
1021 tgttcccggt tgatgacata tttgcgaggg atcagtaata aggtcgtagt tggtaatgtt
1081 gtggccaacc gtggttggcg ggctgaggat gagcaattaa cgacggttat aattgctgcc
1141 tacctcacca tttgtcatca aaggtgggta cgcactcagg gtattgctaa ggggatcaag
1201 agattgcagg cggaacatgc ccaaacattc tggttcaggg tctgggaatt tttcaccaat
1261 agacctggta cggtacccgg ttacagtgtt gacttttaca ggatgctggc gtcgtggatc
1321 agtggggggc tgatcataga tgtccaaggc aaggtgttcg acctccggct ccggtgtggt
1381 tgttgttgtt tgccgaatag ccgggattcg gactggggca tattggacac caatggtgat
1441 gaagttgagg aattcccgca caagtgtaag gagtggcaca ttagacctgt tgccgcaggg
1501 acctctgtaa atgcaaaaca agtagtggtg agggccagtt ccgaagaaga tctgattgtg
1561 cttgatcaca cacctactgg agtggtggtg ccctcactta gggagcttgc agcacgtgct
1621 ataggtttta aaagtttggc caaaccgcct gaactaatgg caccaacccc aggcgttgtc
1681 cagcgccctg ctgttgttgc tgcgaccagg gatgccagca tatgtgcggc caatcagttg
1741 ccgagtcctg ctgaacctga ccccaatcgc ccacctatta acccaggtag gcctaacctt
1801 agcgcccgcg tgttgttgat tctcccggac ggtgcgagga tcattgtcgg tgatctattt
1861 aattcagcag ccaaatggct ggttaacgcg gccaataaga accatcggcc aggaggaggg
1921 gtttgcgggc agttctaccg gcggtggccg cagttgtggc ctgtgtgggg cacatcgata
1981 cgcacaagtt cgggtgatgt gtacttccag cgtgcggatc gctgggttat acacgctccc
2041 gcccccgatg ccagggtgca accagtaaca acggaggaac taattgaggt ctacgctgcc
2101 acggctgaaa gggaaggcaa tgctgcatat cctgtgttgg ggtctggtat ttttggatgt
2161 gattttatgg cttctgtctg tgcttggttg agcacccgca gacctgaaga tgagttgtat
2221 attcatccat ctgatttgga tcgctacaac ccccagatgt tacctcctgg gctgttgggt
2281 gcgggacctc ccaaaactgt agagatatcc ccgggtgctg ctgagatagc taacctcggc
2341 ctaaccactg agccggatcc gtattgccgt tatacccgcg ggatccaagt tcaacctggg
2401 cccataactt atagatttat agccggggtg cctggttctg gaaagtctac gtcggttgat
2461 catacagatg ccgttgttgt tgccccaacc cgcaccttag tggatgggtg ggtggcccgt
2521 ggggcggtcg cctatacacc ccataaggcc ttatctaagg ttgcagggcg gcgggtcata
2581 tttgatgagg cacctagtgt accgaagcat ttattactag cattgattca gcccgccgct
2641 gaagttcttt tattagggga ccctaatcaa ataccagcta ttgattttga tgataggatg
2701 atttctcagg cgattgatac gatctttgaa cctaccgagt ggcgcaacat cacccaccgc
2761 tgcccgcagg atgtttgccg gtacatatcg gctgattacc ctggaatcac cacgactagc
2821 actgttgtga ggtccgtgat gtttgatggc cctatagttg gacaaaagat tgtgttcacg
2881 caggctgcta aggcagcaaa cccaggctca gtgacagtcc atgaggctca aggttgtact
2941 tatgaccgtg tgacccttat tgctacgatg gatgcgcgcg gccttattgc gacgtcccgg
3001 gcgcatgcaa tagttgcgct tacgcgccac accaaggttt gtagggttgt tgatgaagga
3061 ggcgcgcttg tggatgttgg tgtcacagat gccatgttcc tttctattga aatgcagtta
3121 gtccatgtga gaccggcgtt gccggctcgt atcgagcggg cccacccccc ggacccggac
3181 ggtactcccg tttttacagc tgttcagaca gatgttacag cgagactaac tgccgaggtt
3241 attgggcacc agccactgga actcgcggca gttaaccctc agtgcccccc actagagcaa
3301 ggtctgctgt ttatgcctga gcgtctcgat ggtaaagatg agattgtggt tatgcggttg
3361 tctgatactg tgcactgcag ggtagcagcc ccgacaagtc gtttagcgat catcaacaca
3421 cttgttgggc gttatgggcg cgaaacaaag ttgtcagagg agtcatattc ggtgcgggaa
3481 gtgttggcac aatatattcc ctgcctgaag ccctgtccgc caaccactgt ggagtatatg
3541 gagttggtgc aagctatgga ggataagggt cagaccggag ccctagtatt agaactgaca
3601 gatgattcca aggcacgttt caggatttcg tttttccaaa aggactgtgc aaaatacaca
3661 ttagatgagc ctttgtgtca tggaaaagtc ggccagggca tatcagcctg gcctaagacc
3721 ctttgccatc tttttggtcc ttggttccgg tcaattgaaa aacaaattgt gcaaaaccta
3781 ccaccaggag tattttatgg agatttgtat gttgagtccg agcttcatgc ggctgtgatg
3841 tgcgttcccc ccgatgtcca ggtttttgaa aatgatttct ctgagtttga cagcacccaa
3901 aacaatgtct cattagacct tgagacattg cttctgacgg aggcaggcat gcctaagtgg
3961 atggttgaac tctatcgatt ggttaggcag tactggacac taactgctcc aaaggaagcc
4021 ctgcgtgggt gctggaagaa gcactctggg gaacccggaa cacttttgtg gaatactgtg
4081 tggaatatgg ctgctgtatc ttatgtgtat gattttgaac gacgctatgt agcatgtttc
4141 aaaggggatg acagcgtggt acttgctggg gaggttttgc cccgccctgg tgggcagtcc
4201 ttaatcgcgg gctgcggcct gaagatgaag gataaggtgg gcagaatagg agtgtattca
4261 aatttaattg tggccccagg tgtgggggtt gttaaggatg tgttacgcta ctgggcgcgc
4321 ttgactgaaa agaattttgg ccccaccgag gagcgaatgt tagagcttag ggatgctgcc
4381 gcggactttg tacagcaggt ccggtatgag gggaaggaga tgctgatggt tgaattgtgc
4441 gcagcatact atggcacgac ccgtggcttt atggaagtca cttggcaggg cattttggct
4501 gtggctgagg gccgtgccgg cctaaatacc taccggatgc cagtcctcaa tattgagggt
4561 ggggacaaat aacactcatt ttgcatgcat gcagtcgata gaagaggtgc ttctattcat
4621 ctgggccatt gagtacctct gcatcattgc ttgtgcatgt ttgggtttag tcagtttaca
4681 aaacagctcc gaattcttaa ttgggttgct gctgggatat ctgtgttgtt attgggcatc
4741 tttgttgtgt tgttagttag gtgcatgtcg cagaaatgtg gctgcctgtg catctgtttc
4801 tcttgttgtt gcaaatgtta ccaggcgtgt ccaccggcgt tcagaccgga ggcaactcca
4861 cccgccgtaa tccccgccgt cgtaacgcag cctgggctgc accacgacaa ggacccaata
4921 ccaactcaac ctacggcgcc acccctctta caaaatcagc caccgcagtg ggtacgcgcc
4981 cagttccaga tgtaaatcaa gctggtgcag tgttacggcg acagtataac ctggtcactt
5041 cccctcttag tttgtctatt actggatcaa caaactcttt gctttatggt gccccagtta
5101 acccccttat gcctttgcag gacgggtcca cacaaacaat aatgtccact gagtcgtcta
5161 attatgccca gtatcgggta aaggccctca catttcgttg gcgaccggtt gtgcctaatg
5221 ctgttggtgg tttttccata tctcttgcat actggcctca agcaacaagc atgcctacta
5281 gtgttgacat gaactccatc actagcactg atgtccgtat agttttgcag ccaggtacag
5341 cgggcgagct agtcatacca tcagagcggc tgcattataa aaatcagggt tggcgatcag
5401 ttgaaaccca gagtgtccca caggaggacg cgacctccgg tgttatcatg gttacttgcc
5461 atgggagccc catgaattct tatatcaatc aggcgtacac cggcccgctt ggtatgctag
5521 atattgccat ggaccttgag ttgaggaatt tgtccccagg caataccaac gctagggtga
5581 cacgcacaaa agttacagca cgccataaaa tacagtctac accaggtggg gctatcatac
5641 ccactgcggc agcgctcagg ttcatgaatg atgctaaatg gggtcttgca tccccatcgg
5701 aaggagacac cgggcatggt gtgttgggtg tgttgtttaa tattgctgac acaattttag
5761 gcggtctacc atctaccttg ctacgcgcag caggcggtca attcatgtat ggtcgcccgg
5821 ttgggaccgc caatggagag cctgcggttc gattgtatgc cacagtcgaa gatgccatca
5881 atgatcggcc cctgactgtg ccccatgaca tcgatttagg ggacagtact gttgtcgtgc
5941 aagattacga taaccaacat gtgtccgatc gcccctcgcc tgcacctgcg cctaagcggg
6001 cccttgggac ccttcgagtt ggtgatgtgt taagggtcga catgccgcgg gcccagtatg
6061 ttaccaacgg ggagttgctg ccccaatctg tagcacaggg ttatattacg gtcggggctg
6121 tggtgcataa tttaataaca ggtgtgcggg cagcagctaa tactgtagac tggacgcaag
6181 ctacggttga tggcgtgcca gtgaaagtgg tgggggcggg gtcgggttcc cagcattttg
6241 ccgccatacc ggcttgtggc aaaccatcgt tttggggagc aatgggtgca ggttactttt
6301 acaattacaa caacacacat caggagtggc tttatttttc ccaggggtcg gcgcagacag
6361 ctgtggctgc atacaccaat atgttgggta acacggccga catatcattc ttgatggagg
6421 tacgcgctgt tactgatggg gttccagtgg ctgtggcgcc agccctagcg gtgtcaggcc
6481 ctaatgacct gtcccgtttg cagcgcccga tttgtgttga tcacgggcga ctgtgttgtt
6541 ctatctgtaa gccttgagag aggctgttga ttttcccctg taattagggg catggtttaa
6601 tttattgttt aatttatctt ttcaatgaat ttagtaattt agaatccgtt ccgggcatgt
//
