LOCUS       NC_076730               1970 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Chicken virus mg5_2876, complete genome.
ACCESSION   NC_076730
VERSION     NC_076730.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Chicken virus mg5_2876
  ORGANISM  Chicken virus mg5_2876
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Rivendellvirales; Naryaviridae; Nauglamirvirus;
            Nauglamirvirus anduin.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
            and Varsani,A.
  TITLE     Identification of single stranded DNA viruses in chicken tracheal
            swab swabs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1970)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1970)
  AUTHORS   Chrzastek,K., Kapczynski,D., Kulkarni,A., Chappell,L., Schmidlin,K.
            and Varsani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2019) The Biodesign Center of Fundamental and
            Applied Microbiomics, Arizona State University, 1001 S. McAllister
            Ave, Tempe, AZ 85287-5001, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MN379590.
            
            ##Assembly-Data-START##
            Assembly Method       :: metaSPADES v. 3.12.0
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Chicken virus mg5_2876"
                     /mol_type="genomic DNA"
                     /isolate="mg5_2876"
                     /isolation_source="tracheal swab"
                     /host="Gallus gallus"
                     /db_xref="taxon:2720907"
                     /country="USA"
                     /collection_date="2017"
     gene            44..808
                     /locus_tag="QKR05_gp1"
                     /db_xref="GeneID:80538651"
     CDS             44..808
                     /locus_tag="QKR05_gp1"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="YP_010800182.1"
                     /db_xref="GeneID:80538651"
                     /translation="MAYGRRSRRLYTRRNRRSLSNRYIYGKKGSSAQAKQIAALRNRV
                     SAIAKSCRPETKVTYQEFGNVFNNSSTAANSWGNFIYLPKAQIDGNTIQWKSFRLCGN
                     FEYSDTFGTNVAIDHQRTCTMRIIVYQLKSASNKTPGIDGILDVTPTGVGYELNAYKP
                     FKAGAGRTVKILSNRVITLSDQQPIKRFDIKLNKGLINETYLLDNESDLQDVVELPTP
                     RGAFGVSIVASGLHWDSTYSQQVRANFFVKTAFTDN"
     gene            complement(1050..1970)
                     /locus_tag="QKR05_gp2"
                     /db_xref="GeneID:80538650"
     CDS             complement(1050..1970)
                     /locus_tag="QKR05_gp2"
                     /codon_start=1
                     /product="replication associated protein"
                     /protein_id="YP_010800183.1"
                     /db_xref="GeneID:80538650"
                     /translation="METVENGNTSLGNTKARDVSFGGKARAYQLTLNEVERYDELKDY
                     LTGLKATDYYIACKEEAPTTGHEHIHIYVHFNNARKLSIKKCCNAHIEVCRGTPQQNI
                     DYILKDGNVIDEIGKRPHQGGYNIKDLKKLSNDELEELPAIYYNTVKKIQDERNKVFT
                     IKDFRKQTKIYYIFGPSGVGKTNKALDIIEEHKELSETFNIVKYENNFWLGASETEKI
                     ALYDDFRDSHLKASEFINFIDYNKHFMNIKGGSIKNNYELVIITSVQSPYTIYRNMED
                     EPRKQWLRRMEIINLGKETIEEQINMLIDD"
     misc_feature    complement(1647..>1811)
                     /locus_tag="QKR05_gp2"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    complement(1182..1457)
                     /locus_tag="QKR05_gp2"
                     /note="P-loop containing Nucleoside Triphosphate
                     Hydrolases; Region: P-loop_NTPase; cl38936"
                     /db_xref="CDD:453896"
ORIGIN      
        1 tttttaatta tgataaaata cctccctttt ttcataactt aaaatggcat atggtagacg
       61 ttctcgaaga ctttatactc gtcgcaatcg cagatctctt agtaatcgtt atatatatgg
      121 taagaaaggt tctagtgcac aagccaaaca aatagctgct ttacgtaatc gtgttagtgc
      181 tatcgctaag tcttgtcgtc ctgaaacaaa agtaacttat caagagtttg gtaacgtatt
      241 taataattct tctactgctg ctaactcctg gggtaatttt atatatttac ctaaggctca
      301 aattgatggc aataccatac agtggaagag cttcagacta tgcggtaact ttgaatattc
      361 tgatacgttt ggcactaatg tagctataga tcatcaaaga acttgtacta tgcgcattat
      421 agtttatcag cttaagagtg cttctaataa aacccctgga attgatggta tcttagatgt
      481 aacacctact ggtgttggtt atgagttaaa tgcttataaa ccatttaaag caggagctgg
      541 tagaacggtt aagatcctca gcaatagagt tattacatta tcagaccaac aacctattaa
      601 acgttttgat atcaaactta ataaaggctt gatcaatgaa acatacttgc ttgacaatga
      661 aagcgatctt caagatgttg tagagctgcc tacaccaagg ggagcatttg gtgtttcaat
      721 agttgcttct ggactacatt gggattctac ttatagtcaa caagttaggg ctaacttctt
      781 tgtaaaaact gctttcaccg ataactaact catcgataaa aacaaatatc caataattcg
      841 tatcaaccac cctaatatat aatattcatt ttcctcaaag aagcgagggg atgaagaaca
      901 aagcataaat agcgagattg atttatgaat ctctttgttc tcaccctggg ggagaaccga
      961 acaaagaggg agaaaattgt aatcttgata gtaagccttt gagaatatcc ctttcgcgag
     1021 gggatgaatg aatagcttat catttatttt taatcatcta ttaacatatt aatttgctct
     1081 tctatagtct cttttcctaa gttgattatc tccatccttc ttaaccattg tttacgcggt
     1141 tcatcctcca tattcctata tattgtataa ggtgattgta cagaggtaat tatcactaac
     1201 tcatagttgt ttttgatgct accccctttt atattcataa agtgcttatt gtaatcaata
     1261 aagttaatga actccgaagc ttttaagtgt gaatctctga aatcatcata taacgctatt
     1321 ttctctgttt cgctagctcc aagccaaaag ttgttctcat acttaactat attgaatgtt
     1381 tcgcttagtt ccttatgctc ttctataatg tctaatgctt tatttgtttt gccaactcct
     1441 gaaggtccaa atatataata tatcttggtt tgcttacgaa aatccttaat agtgaatacc
     1501 ttattacgtt catcttgtat tttcttaact gtattgtaat atatggctgg taactcctct
     1561 aattcatcat tagataactt ctttaaatcc ttaatgttat aacctccttg atgtggtctt
     1621 ttacctattt catctataac gttaccatcc ttaagtatat agtctatgtt ctgttgtggt
     1681 gtacctctac atacttcaat atgtgcatta cagcactttt taatagataa cttccttgcg
     1741 ttattgaaat gtacgtaaat atgtatatgt tcgtgtccag tagtaggtgc ttcctcttta
     1801 catgctatat aatagtcagt tgctttaagt cctgttaaat agtcctttaa ttcatcgtat
     1861 ctctcaactt cattaagtgt taattggtat gcacgagcct ttcccccaaa ggaaacatcc
     1921 ctagccttag tattacctag ggatgtgttt ccattttcaa ctgtttccat
//