LOCUS NC_077769 3261 bp RNA linear VRL 08-MAY-2023
DEFINITION Infectious bursal disease virus RNA for small ORF (P2).
ACCESSION NC_077769
VERSION NC_077769.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq; ORF.
SOURCE Infectious bursal disease virus (Gumboro virus)
ORGANISM Infectious bursal disease virus
Viruses; Riboviria; Orthornavirae; Birnaviridae; Avibirnavirus;
Avibirnavirus gumboroense.
REFERENCE 1
AUTHORS Mundt,E. and Muller,H.
TITLE Complete nucleotide sequences of 5'- and 3'-noncoding regions of
both genome segments of different strains of infectious bursal
disease virus
JOURNAL Virology 209 (1), 10-18 (1995)
PUBMED 7747460
REFERENCE 2 (bases 1 to 3261)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3261)
AUTHORS Mundt,E.
TITLE Direct Submission
JOURNAL Submitted (10-JAN-1995) E. Mundt, Dept.of Mol. and Cellular
Virology, Federal Research Centre for Viral Diseases of Animals,
Insel Riems, D- 17498, FRG
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to X84034.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3261
/organism="Infectious bursal disease virus"
/mol_type="genomic RNA"
/strain="P2"
/isolate="1977, from Schobries et al (1977)"
/db_xref="taxon:10995"
/segment="A"
/cell_type="primary chicken embryo cells"
gene 97..534
/locus_tag="QK495_sAgp1"
/db_xref="GeneID:80548987"
CDS 97..534
/locus_tag="QK495_sAgp1"
/note="small ORF"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_010839355.1"
/db_xref="InterPro:IPR004284"
/db_xref="UniProtKB/TrEMBL:Q77DJ4"
/db_xref="GeneID:80548987"
/translation="MVSRDQTNDRSDDKPARSNPTDCSVHTEPSDANNRTGVHSGRHP
GEAHSQVRDLDLQFDCGGHRVRANCLFPWIPWLNCGCSLHTAEQWELQVRSDAPDCPE
PTGQLQLLQASESESHSEVKHTSWWRLCTKRHHKRRDLPRKPE"
misc_feature 127..531
/locus_tag="QK495_sAgp1"
/note="Birnavirus VP5 protein; Region: Birna_VP5;
pfam03042"
/db_xref="CDD:281092"
gene 131..3169
/locus_tag="QK495_sAgp2"
/db_xref="GeneID:80548986"
CDS 131..3169
/locus_tag="QK495_sAgp2"
/note="large ORF"
/codon_start=1
/product="hypothetical protein"
/protein_id="YP_010839356.1"
/db_xref="GOA:Q82627"
/db_xref="InterPro:IPR002662"
/db_xref="InterPro:IPR002663"
/db_xref="InterPro:IPR002664"
/db_xref="UniProtKB/TrEMBL:Q82627"
/db_xref="GeneID:80548986"
/translation="MTNLQDQTQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETST
YNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQNLPASYNYCRLV
SRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLV
GEGVTVLSLPTSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSS
QYQPGGVTITLFSANIDAITSLSVGGELVFRTSVHGIVLGATIYLIGFDGTAVITRAV
AANNGLTTGTDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSARGSLA
VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDP
GAMNYTKLILSERDRLGIKTVWPTREYTDFREYFMEVADLNSPLKIAGAFGFKDIIRA
IRRIAVPVVSTLFPPAAPLAHAIGEGVDYLLGDEAQAASGTARAASGKARAASGRIRQ
LTLAADKGYEVVANLFQVPQNPVVDGILASPGVLRGAHNLDCVLREGATLFPVVITTV
EDAMTPKALNSKMFAVIEGVREDLQPPSQRGSFIRTLSGHRVYGYAPDGVLPLETGRD
YTVVPIDDVWDDSIMLSKDPIPPIVGNSGNLAIAYMDVFRPKVPIHVAMTGALNACGE
IEKVSFRSTKLATAHRLGLKLAGPGAFDVNTGPNWATFIKRFPHNPRDWDRLPYLNLP
YLPPNAGRQYHLAMAASEFKETPELESAVRAMEAAANVDPLFQSALSVFMWLEENGIV
TDMANFALSDPNAHRMRNFLANAPQAGSKSQRAKYGTAGYGVEARGPTPEEAQREKDT
RISKKMETMGIYFATPEWVALNGHRGPSPGQLKYWQNTREIPDPNEDYLDYVHAEKSR
LASDEQILRAATSIYGAPGQAEPPQAFIDEVAKVYEINHGRGPNQEQMKDLLLTAMEM
KHRNPRRALPKPKPKPNAPTQRPPGRLGRWIRTVSDEDLE"
misc_feature 155..1486
/locus_tag="QK495_sAgp2"
/note="Birnavirus VP2 protein; Region: Birna_VP2;
pfam01766"
/db_xref="CDD:280020"
misc_feature 1490..2296
/locus_tag="QK495_sAgp2"
/note="Birnavirus VP4 protein; Region: Birna_VP4;
pfam01768"
/db_xref="CDD:280022"
misc_feature 2348..3052
/locus_tag="QK495_sAgp2"
/note="Birnavirus VP3 protein; Region: Birna_VP3;
pfam01767"
/db_xref="CDD:426418"
ORIGIN
1 ggatacgatc ggtctgaccc cgggggagtc acccggggac aggtcttcaa ggccttgttc
61 caggatggaa ctcctccttc tacaacgcta tcattgatgg ttagtagaga tcagacaaac
121 gatcgcagcg atgacaaacc tgcaagatca aacccaacag attgttccgt tcatacggag
181 ccttctgatg ccaacaaccg gaccggcgtc cattccggac gacaccctgg agaagcacac
241 tctcaggtca gagacctcga cctacaattt gactgtgggg gacacagggt cagggctaat
301 tgtctttttc cctggattcc ctggctcaat tgtgggtgct cactacacac tgcagagcaa
361 tgggaactac aagttcgatc agatgctcct gactgcccag aacctaccgg ccagttacaa
421 ctactgcagg ctagtgagtc ggagtctcac agtgaggtca agcacacttc ctggtggcgt
481 ttatgcacta aacggcacca taaacgccgt gaccttccaa ggaagcctga gtgaactgac
541 agatgttagc tacaatgggt tgatgtctgc aacagccaac atcaacgaca aaattgggaa
601 cgtcctagta ggggaagggg tcaccgtcct cagcttaccc acatcatatg atcttgggta
661 tgtgaggctt ggtgacccca ttcccgcaat agggcttgac ccaaaaatgg tagccacatg
721 tgacagcagt gacaggccca gagtctacac cataactgca gccgatgatt accaattctc
781 atcacagtac caaccaggtg gggtaacaat cacactgttc tcagccaaca ttgatgccat
841 cacaagcctc agcgttgggg gagagctcgt gtttcgaaca agcgtccacg gcattgtact
901 gggcgccacc atctacctca taggctttga tgggacagcg gtaatcacca gggctgtggc
961 cgcaaacaat gggctgacga ccggcaccga caaccttatg ccattcaatc ttgtgattcc
1021 aacaaacgag ataacccagc caatcacatc catcaaactg gagatagtga cctccaaaag
1081 tggtggtcag gcaggggatc agatgtcatg gtcggcaaga gggagcctag cagtgacgat
1141 ccatggtggc aactatccag gggccctccg tcccgtcacg ctagtggcct acgaaagagt
1201 ggcaacagga tccgtcgtta cggtcgctgg ggtgagcaac ttcgagctga tcccaaatcc
1261 tgaactagca aagaacctgg ttacagaata cggccgattt gacccaggag ccatgaacta
1321 cacaaaattg atactgagtg agagggaccg tcttggcatc aagaccgtct ggccaacaag
1381 ggagtacact gactttcgtg aatacttcat ggaggtggcc gacctcaact ctcccctgaa
1441 gattgcagga gcattcggct tcaaagacat aatccgggcc ataaggagga tagctgtgcc
1501 ggtggtctcc acattgttcc cacctgccgc tcccctagcc catgcaattg gggaaggtgt
1561 agactacctg ctgggcgatg aggcacaggc tgcttcagga actgctcgag ccgcgtcagg
1621 aaaagcaaga gctgcctcag gccgcataag gcagctgact ctcgccgccg acaaggggta
1681 cgaggtagtc gcgaatctat tccaggtgcc ccagaatccc gtagtcgacg ggattcttgc
1741 ttcacctggg gtactccgcg gtgcacacaa cctcgactgc gtgttaagag agggtgccac
1801 gctattccct gtggttatta cgacagtgga agacgccatg acacccaaag cattgaacag
1861 caaaatgttt gctgtcattg aaggcgtgcg agaagacctc caacctccat ctcaaagagg
1921 atccttcata cgaactctct ctggacacag agtctatgga tatgctccag atggggtact
1981 tccactggag actgggagag actacaccgt tgtcccaata gatgatgtct gggacgacag
2041 cattatgctg tccaaagatc ccatacctcc tattgtggga aacagtggaa atctagccat
2101 agcttacatg gatgtgtttc gacccaaagt cccaatccat gtggctatga cgggagccct
2161 caatgcttgt ggcgagattg agaaagtaag ctttagaagc accaagctcg ccactgcaca
2221 ccgacttggc cttaagttgg ctggtcccgg agcattcgat gtaaacaccg ggcccaactg
2281 ggcaacgttc atcaaacgtt tccctcacaa tccacgcgac tgggacaggc tcccctacct
2341 caacctacca taccttccac ccaatgcagg acgccagtac caccttgcca tggctgcatc
2401 agagttcaaa gagacccccg aactcgagag tgccgtcaga gcaatggaag cagcagccaa
2461 cgtggaccca ctattccaat ctgcactcag tgtgttcatg tggctggaag agaatgggat
2521 tgtgactgac atggccaact tcgcactcag cgacccgaac gcccatcgga tgcgaaattt
2581 tcttgcaaac gcaccacaag caggcagcaa gtcgcaaagg gccaagtacg ggacagcagg
2641 ctacggagtg gaggctcggg gccccacacc agaggaagca cagagggaaa aagacacacg
2701 gatctcaaag aagatggaga ccatgggcat ctactttgca acaccagaat gggtagcact
2761 caatgggcac cgagggccaa gccccggcca gctaaagtac tggcagaaca cacgagaaat
2821 accggaccca aacgaggact atctagacta cgtgcatgca gagaagagcc ggttggcatc
2881 agatgaacaa atcctaaggg cagctacgtc gatctacggg gctccaggac aggcagagcc
2941 accccaagct ttcatagacg aagttgccaa agtctatgaa atcaaccatg gacgtggccc
3001 aaaccaagaa cagatgaaag atctgctctt gactgcgatg gagatgaagc atcgcaatcc
3061 caggcgggct ctaccaaagc ccaagccaaa acccaatgct ccaacacaga gaccccctgg
3121 tcggctgggc cgctggatca ggaccgtctc tgatgaggac cttgagtgag gctcctggga
3181 gtctcccgac accacccgcg caggtgtgga caccaattcg gccttacaac atcccaaatt
3241 ggatccgttc gcgggtcccc t
//
