LOCUS       NC_078215                995 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-U2, complete sequence.
ACCESSION   NC_078215
VERSION     NC_078215.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 995)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 995)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035734.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-U2"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(978..995,1..11)
                     /gene="u2"
                     /locus_tag="QK636_sU2gp1"
                     /note="part of replication origin"
     misc_feature    join(989..995,1..2)
                     /gene="u2"
                     /locus_tag="QK636_sU2gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..995
                     /gene="u2"
                     /locus_tag="QK636_sU2gp1"
                     /db_xref="GeneID:80550054"
     regulatory      126..131
                     /regulatory_class="TATA_box"
                     /gene="u2"
                     /locus_tag="QK636_sU2gp1"
     CDS             173..538
                     /gene="u2"
                     /locus_tag="QK636_sU2gp1"
                     /codon_start=1
                     /product="U2 protein"
                     /protein_id="YP_010839889.1"
                     /db_xref="GeneID:80550054"
                     /translation="MDYKHKRFAYIEAIKQEQDLFWVLYESFLRNNEEMIGAMCKYHG
                     RRVKAYPKMPRDGPARWVLKMKTVYDIRENECQKCKEEERRLASKPVVNCKDNNLHDL
                     YDYGNYRYQVYYSVNENDK"
     regulatory      610..617
                     /regulatory_class="polyA_signal_sequence"
                     /gene="u2"
                     /locus_tag="QK636_sU2gp1"
ORIGIN      
        1 acccccgtgc cgggatcaga gacatttgac caagtttgac taaatagtga taaatgaaac
       61 gctgcgtttt aataagctta ttgtgtaagc tgctaagacg tactgagtac gctttgtatt
      121 gggtctataa atagagtgct tctgaacaga ttgttcagaa tttcattgcg agatggatta
      181 taagcataaa cgttttgctt atattgaagc tattaagcaa gaacaagatt tgttctgggt
      241 tttatatgaa tcatttcttc gtaataatga agaaatgata ggagctatgt gcaaatatca
      301 tggaagaaga gtgaaggctt atcctaagat gcctagagat ggacctgcaa ggtgggtgtt
      361 gaagatgaag actgtttatg acattcgtga aaatgaatgt cagaagtgca aggaagaaga
      421 gcgtcgttta gctagtaagc ctgttgtaaa ttgtaaagat aataatttac atgatttgta
      481 tgattatggt aattatagat atcaagtgta ttactctgta aatgagaatg ataaatgaga
      541 attattatta tttactggtg ttgaagtttt ttaagctttt atctgtgttt taatggcgtc
      601 tggagagaga ataataattg taaggttgaa gacgatgtaa ggtagacgcc tatgtagtgg
      661 attacaactg tcttagcttc ttgaagaagc taatacacgt gtcaagcgct gagtgaataa
      721 cgctttaagg ttgcttcgct tcgaagtaaa gacgtgtgtc aagttgtgag tgttattgct
      781 tttgaggaag cttcctcgaa gcaaggtatt tactttaatt ggaagcgcgt cactaaagat
      841 aaaaagaata agatgacgtg gagtgatatg attggtcata ataagctaat gaggataata
      901 attgaatttg attaaattaa ttctgcgaag cattatgtct ttcacgtgag agtcacgtga
      961 tgtctccgcg acaggctggc acggggctta gtatt
//