LOCUS       NC_078216               1002 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-N, complete sequence.
ACCESSION   NC_078216
VERSION     NC_078216.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1002)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035732.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-N"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(985..1002,1..11)
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
                     /note="part of replication origin"
     misc_feature    join(996..1002,1..2)
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..1002
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
                     /db_xref="GeneID:80550057"
     regulatory      267..272
                     /regulatory_class="TATA_box"
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
     CDS             337..798
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
                     /codon_start=1
                     /product="nuclear shuttle protein"
                     /protein_id="YP_010839890.1"
                     /db_xref="GeneID:80550057"
                     /translation="MADWFHSALKTCTHVCDFSDIKASSQQDFFCCDSMRGKLSEPRK
                     VLLVSCFVSFTGSFYGSNRNVRGQVQLGMQQDDGVVRPIGYIPIGGYLYHDDYGYYQG
                     EKTFNLDIESDYLKPDEDFWKRFTINIVNDKGLDDRCDVKCYVVHTMRIKV"
     misc_feature    343..795
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
                     /note="Nanovirus component 8 (C8) protein; Region:
                     Nanovirus_C8; pfam05629"
                     /db_xref="CDD:283319"
     regulatory      810..816
                     /regulatory_class="polyA_signal_sequence"
                     /gene="nsp"
                     /locus_tag="QK636_s4gp1"
ORIGIN      
        1 acccccgtgc cgggatcaga gacatttgac taaatattga cttggaataa tagcccttgg
       61 attagatgac acgtggacgc tcaggatctg tgatgctagt gaagcgctta agctgaacga
      121 atctgacgga agagcggaca tacgcacatg gactatggcc cactgcttta ttaaagaagt
      181 ggatgacagc tgtatttgct tcgaggcgaa gtaaagaata gtgaaaacgc gtaaagaata
      241 agcgtactca gtacgcttcg tggctctata aatagtgctt cgtcttattc ttcgttgtat
      301 tatcaacgaa gaagttaagc tttgttctgc gttttaatgg cggactggtt tcacagtgcg
      361 cttaagacat gtactcatgt ctgtgatttt tcagatatta aggcgtcttc acaacaggat
      421 ttcttctgtt gtgatagtat gcgaggtaaa ttatctgaac ctaggaaggt gttgttagtt
      481 agttgttttg taagttttac tggtagtttt tatggaagta ataggaatgt tagaggtcaa
      541 gttcagttgg gtatgcagca agatgatggc gttgttcgtc caataggata tattcctatt
      601 gggggttatt tgtatcatga tgattatgga tattatcaag gagagaagac gttcaatctg
      661 gacatcgagt cagattatct gaagcctgat gaagattttt ggaagagatt tacaattaat
      721 attgtaaatg ataaaggatt agatgatagg tgtgatgtaa aatgttatgt agttcatacg
      781 atgcgtatta aggtgtaatt gttattatca ataaaagaat ttttattgtt attgtgttat
      841 ttggtaattt atgcttataa gtaattctat gattaattgt gaattaataa gactaatgag
      901 gataataatt gaatttgatt aaattaactc tgcgaagcta tatgtctttc acgtgagagt
      961 cacgtgatgt ctccgcgaca ggctggcacg gggcttagta tt
//