LOCUS       NC_078217                985 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-U1, complete sequence.
ACCESSION   NC_078217
VERSION     NC_078217.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 985)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 985)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035733.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-U1"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(969..985,1..10)
                     /gene="u1"
                     /locus_tag="QK636_s7gp1"
                     /note="part of replication origin"
     misc_feature    join(979..985,1..2)
                     /gene="u1"
                     /locus_tag="QK636_s7gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..985
                     /gene="u1"
                     /locus_tag="QK636_s7gp1"
                     /db_xref="GeneID:80550060"
     regulatory      308..313
                     /regulatory_class="TATA_box"
                     /gene="u1"
                     /locus_tag="QK636_s7gp1"
     CDS             374..814
                     /gene="u1"
                     /locus_tag="QK636_s7gp1"
                     /codon_start=1
                     /product="U1 protein"
                     /protein_id="YP_010839891.1"
                     /db_xref="GeneID:80550060"
                     /translation="MVSFSFPEIYDVSDDVLVSDSRRSVAVEVEEKVQVINVKVLRLI
                     EAVDEDRVGVKVMFRLCYRYRRELKITLLGCKMKLWTSLKSSGKYSVQSLLQRKLNGI
                     CVSNYCIGIDMFVSNVKEVINRCKWITSVQDVNPICCLYHMDEE"
     regulatory      870..875
                     /regulatory_class="polyA_signal_sequence"
                     /gene="u1"
                     /locus_tag="QK636_s7gp1"
ORIGIN      
        1 acccccgccc cgggatcaga gacatttgac caatagttga cttggaataa tagcccttgg
       61 attagatgac acatggacgc tcaggatctg tgatactagt gaagcgctta agctgaacga
      121 atctgacgga agagcggaca tacgcacatg gattatggcc cacatgtcta aagtgtatct
      181 ctttacagct atattgatgt gacataagat gctttacttc gcctcgaagt aaagtaggaa
      241 attgctcgct aagttattct tttctgaaag aaattaattt aattctaaat taaattaaat
      301 gagtggctat aaatagtgtc gatgctacct cacatcgtct tcttcttcgc atcgtctgtt
      361 ctggttttaa gcgatggtta gttttagttt tcctgagata tacgatgtga gcgacgatgt
      421 tcttgtaagc gatagcagaa gaagtgtagc tgttgaggtc gaagagaagg ttcaagtgat
      481 taacgtgaag gtactgaggt tgattgaagc tgttgatgaa gatagagttg gagtgaaggt
      541 tatgtttcgt ctgtgttaca gatacagacg agaactgaag attacgttgt tgggttgtaa
      601 gatgaagcta tggacttcgt tgaagtcttc aggcaagtat tcagttcaat ctttgttgca
      661 gaggaagctt aatggtatat gtgttagtaa ttactgtata gggattgata tgtttgtaag
      721 taatgttaaa gaggtgatta atagatgtaa atggattaca tctgttcaag atgttaatcc
      781 tatatgttgt ttgtatcata tggacgaaga gtaattaata gtaattatga ttaattatga
      841 gataagagtt gttattaatg tttatgagga ataaagaatg attaatattg tttaatttta
      901 ctccgcgaag cggtgtgtta tgtttttgtt ggagacatat gacgtcatat gtctccgtgc
      961 ctacgtcagg gcggggctta gtatt
//