LOCUS       NC_078218               1003 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-U4.1, complete sequence.
ACCESSION   NC_078218
VERSION     NC_078218.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1003)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035735.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-U4.1"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(987..1003,1..10)
                     /gene="u4"
                     /locus_tag="QK636_sU4.1gp1"
                     /note="part of replication origin"
     misc_feature    join(997..1003,1..2)
                     /gene="u4"
                     /locus_tag="QK636_sU4.1gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..1003
                     /gene="u4"
                     /locus_tag="QK636_sU4.1gp1"
                     /db_xref="GeneID:80550063"
     regulatory      192..197
                     /regulatory_class="TATA_box"
                     /gene="u4"
                     /locus_tag="QK636_sU4.1gp1"
     CDS             260..559
                     /gene="u4"
                     /locus_tag="QK636_sU4.1gp1"
                     /codon_start=1
                     /product="U4 protein"
                     /protein_id="YP_010839892.1"
                     /db_xref="GeneID:80550063"
                     /translation="MNFLVYSLAGLLIIFITNPGIVISMILGGIIGWLSGRKSLRKVK
                     NEDEGVAERIEEEDQVSCKPLDALRYLEIIGLCDLQLSGEDHEYVQNLWNKLRRE"
     regulatory      539..544
                     /regulatory_class="polyA_signal_sequence"
                     /gene="u4"
                     /locus_tag="QK636_sU4.1gp1"
ORIGIN      
        1 acccccgccc cgggatcaga gacatttgac caatagttga ctagtataat agctgttgga
       61 ttaaataaca cgtggacgct caggatctgt gatgctagtg aagcgcttaa gctgaacgaa
      121 tctgacggaa gagcgtacac tttctctctc ctaacactgt tagcgtactg agtacgcgtt
      181 acttatttgg ctataaatag acgtcttcgt tgttcagaag acgtgcaatt catttctctc
      241 tcttctctat tcatctctga tgaatttctt ggtatatagt ttggcaggat tattaataat
      301 ttttattact aatcctggta ttgttataag tatgatatta ggaggaatta ttggctggtt
      361 atctggaagg aagtcgctac gtaaggtgaa gaatgaagac gaaggagttg cagagagaat
      421 tgaagaagaa gatcaagttt cttgtaagcc tctagatgct cttaggtatt tagaaattat
      481 aggtttatgt gatttacagt tgagtggtga ggatcatgaa tatgtacaga atttatggaa
      541 taaattaaga cgcgagtagc gttatgtaat ttgttagtag ttaatgagaa ttattattat
      601 ttattgttct tggtgttgaa gttttttaag ctttctctgt attttaatgg cgtctgaata
      661 ataattctaa ggttgaagac gatgtaaggt agccgacgat gtagtggatt acagttgtct
      721 ttacttcgcc tcgaagaaag acacatttca agttgtgagt gttattgctt ttgaggaagc
      781 ttcctcgaag cagcgtataa ctttaatttg aaattggttt tggcgcgtta gtgaaattgc
      841 ggctgtaaac gtgtcaagtt gtgagttgct gaaataagat aatagatata ttattattgt
      901 tttaagttaa ctccgcgaag cgatatgtta agtgataaat gaaacgaagc gttttgatga
      961 cgtcatatgt ctccgtgcct acgtcagggc ggggcttagt att
//