LOCUS       NC_078219               1000 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-S, complete sequence.
ACCESSION   NC_078219
VERSION     NC_078219.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1000)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1000)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035729.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-S"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(983..1000,1..11)
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
                     /note="part of replication origin"
     misc_feature    join(994..1000,1..2)
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..1000
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
                     /db_xref="GeneID:80550066"
     regulatory      315..320
                     /regulatory_class="TATA_box"
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
     CDS             362..871
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="YP_010839893.1"
                     /db_xref="GeneID:80550066"
                     /translation="MVAVRWGRKGLRSQRRKYSRIAYKPPSSKVVSHVESVLNKRDVT
                     GAEVKPFADGSRYSMKKVMLIATLTMAPGELVNYLIVKSNSPIANWSSSFSNPSLMVK
                     ESVQDTVTIVGGGKLESSGTAGKDVTKSFRKFVKLGSGISQTQHLYLIIYSSDAMKIT
                     LETRMYIDV"
     misc_feature    374..868
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
                     /note="Nanovirus coat protein; Region: Nanovirus_coat;
                     pfam04660"
                     /db_xref="CDD:282509"
     regulatory      887..892
                     /regulatory_class="polyA_signal_sequence"
                     /gene="cp"
                     /locus_tag="QK636_s5gp1"
ORIGIN      
        1 acccccgtgc cgggatcaga gacatttgac taaatattga cttggaataa tagcccttgg
       61 attagatgac acgtggacgc tcaggatctg tgatgctagt gaagcgctta agctgaacga
      121 atctgacgga agagcgtcat ggcccacatg tctaaagaat aatgctttac agttgtattg
      181 atgtgacttt acgcgcttta ctttacttgc tttaagtaaa gtaagattct ttactttgct
      241 tcgcgacgaa gcaaagtgat tgtagctgca gaaattgatg ctttaattac cgggtaacac
      301 ggtttgattg tgggtataaa tatgttctgt tcgtcttctt cgttgtcatt ttacaacgaa
      361 gatggttgct gttcgatggg gaagaaaggg tctgaggtct caaaggagaa aatattcgcg
      421 aattgcttac aaacctcctt cgtctaaggt tgtaagtcat gtggagtctg ttctgaataa
      481 gagagatgtt actggagcgg aggttaagcc attcgctgat ggttcaaggt atagtatgaa
      541 gaaggtaatg ttgattgcaa cattaactat ggctcctgga gaattagtta attatcttat
      601 tgtgaagagt aattcgccta ttgcgaattg gagttcgtct ttcagtaatc cttcgttgat
      661 ggtgaaagag tctgttcaag atacagttac gattgttgga ggaggaaagc ttgagtcttc
      721 tggtactgct ggtaaagatg taactaagtc ttttaggaag tttgttaagc tgggttcagg
      781 tattagtcag acccagcatt tgtatttaat tatttattcc agtgatgcga tgaagatcac
      841 actggagacg agaatgtata ttgatgtata attgtgatga ttaatgaata aagagttgtt
      901 attattcttt gaattactcc gcgaagcggt gtgttatgtt tttgttggag acatatgacg
      961 tcatatgtct ccgcgacagg ctggcacggg gcttagtatt
//