LOCUS       NC_078220               1005 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-M, complete sequence.
ACCESSION   NC_078220
VERSION     NC_078220.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1005)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035731.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-M"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(989..1005,1..10)
                     /gene="mp"
                     /locus_tag="QK636_s1gp1"
                     /note="part of replication origin"
     misc_feature    join(999..1005,1..2)
                     /gene="mp"
                     /locus_tag="QK636_s1gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..1005
                     /gene="mp"
                     /locus_tag="QK636_s1gp1"
                     /db_xref="GeneID:80550069"
     regulatory      184..189
                     /regulatory_class="TATA_box"
                     /gene="mp"
                     /locus_tag="QK636_s1gp1"
     CDS             231..569
                     /gene="mp"
                     /locus_tag="QK636_s1gp1"
                     /codon_start=1
                     /product="movement protein"
                     /protein_id="YP_010839894.1"
                     /db_xref="GeneID:80550069"
                     /translation="MDSGDGYNTYSYEEGAGDAKKEVLYKIGIIMLCIVGIVVLWVLI
                     ILCCAVPRYAKSTMDAWLSSSSIMKRKMASRITGTPFEETGPQRERRWAERRTEATNQ
                     NNNDNVNRFS"
     regulatory      537..544
                     /regulatory_class="polyA_signal_sequence"
                     /gene="mp"
                     /locus_tag="QK636_s1gp1"
ORIGIN      
        1 acccccgccc cgggatcaga gacatttgac taatagttga ctagtataat agctgttgga
       61 ttacatgaca cgtggacgct caggatctgt gatgctagtg aagcgcttaa gctgaacgaa
      121 tctgacggaa gagcgttcac acttagatct agttagcgta cttagtacgc gttgtcttgg
      181 gtctataaat agagtgcttc tgaacagatt gttcagaatt tcatagcgag atggattctg
      241 gtgatggtta caatacatac tcatatgaag aaggtgctgg agatgcgaag aaggaagttt
      301 tatataaaat aggtattatt atgttatgta ttgtagggat tgtagtttta tgggttttaa
      361 ttatattatg ttgtgctgtt cctcgctatg ctaaatcaac gatggacgct tggttatctt
      421 cgtcttctat tatgaagagg aagatggctt caaggattac tggtactccg tttgaagaaa
      481 ctggtcctca gcgtgaaaga agatgggctg aaagaagaac tgaagcgacg aatcagaata
      541 ataatgataa tgtaaataga tttagttgat atgttgtaat tttatatgga ttaatgagaa
      601 ttattattat tctgttcttc gtctgtgttt tttaagcttt ttctgtgttt taatggcgtc
      661 tggagagaga aaggaatatt tgtaaggttg aagacgacga tagtgcttga cactttactt
      721 tgcttcgtca tgaagctaag acagctgtca ttgcttcgcc tcgaagcaag gtatctactt
      781 taattgtaat ttggttttgg cgcctaaagc gcgtcgctaa agagtaaaag aataaactga
      841 cgtggagcga tatgattggt cataataagc taatagattt aattgttatt cttttattta
      901 actccgcgaa gcggtatgtt tagtgaggat aggattgtaa ttgtgttgtt ggagacatat
      961 gacgtcatat gtctccgtgc ctacgtcagg gcggggctta gtatt
//