LOCUS       NC_078221                994 bp    DNA     circular VRL 06-MAY-2023
DEFINITION  Subterranean clover stunt virus isolate Myall Vale 2534B segment
            DNA-C, complete sequence.
ACCESSION   NC_078221
VERSION     NC_078221.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Subterranean clover stunt virus
  ORGANISM  Subterranean clover stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
            Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
  TITLE     Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
            Genome Components
  JOURNAL   Viruses 11 (2), E138 (2019)
   PUBMED   30720711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 994)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 994)
  AUTHORS   Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2018) Institute for Integrative Biology of the
            Cell, UMR9198, Centre National de la Recherche Scientifique France,
            Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to MK035730.
            
            ##Assembly-Data-START##
            Assembly Method       :: Geneious v. 10.2.3
            Sequencing Technology :: Illumina; Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Subterranean clover stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Myall Vale 2534B"
                     /isolation_source="leaf tissue"
                     /host="Vicia faba; deposited at DAR Plant Pathology
                     Herbarium Orange, NSW, Australia; collection number DAR
                     76607"
                     /db_xref="taxon:36772"
                     /segment="DNA-C"
                     /country="Australia"
                     /collection_date="1997"
                     /collected_by="Mark Schwinghamer"
     stem_loop       join(978..994,1..11)
                     /gene="clink"
                     /locus_tag="QK636_s3gp1"
                     /note="part of replication origin"
     misc_feature    join(988..994,1..2)
                     /gene="clink"
                     /locus_tag="QK636_s3gp1"
                     /note="conserved nonanucleotide at replication origin"
     gene            1..994
                     /gene="clink"
                     /locus_tag="QK636_s3gp1"
                     /db_xref="GeneID:80550072"
     regulatory      307..312
                     /regulatory_class="TATA_box"
                     /gene="clink"
                     /locus_tag="QK636_s3gp1"
     CDS             363..857
                     /gene="clink"
                     /locus_tag="QK636_s3gp1"
                     /codon_start=1
                     /product="cell cycle link protein"
                     /protein_id="YP_010839895.1"
                     /db_xref="GeneID:80550072"
                     /translation="MALRYFSHLPEELKEKIMNEHLKEIKKKEFLENSIRAACAVFEG
                     LTKKESVEEDDILRFSGFLEGLSAYYAEATKKKCLVRWKKSVAINLKWRVMEEMHYKL
                     YGFADMEDLYCSELGFPNYGEDDVAYHDGAIVNCKQLEVVFDDLGIEFMSIVIDRGSI
                     KIEL"
     regulatory      880..885
                     /regulatory_class="polyA_signal_sequence"
                     /gene="clink"
                     /locus_tag="QK636_s3gp1"
ORIGIN      
        1 acccccgccc cgggatcaga gacatttgac caatagttga ctagtataat agcccttgga
       61 ttagatgaca cgtggacgct caggatctgt gatgctagtg aagcgcttaa gctgaacgaa
      121 tctgacggaa gagcggacat acgcacatgg attatggccc acatgtctaa agtgtatctc
      181 tttacagcta tattgatgtg acgtaagatg ctttacttcg cctcgaagta aagtagtaaa
      241 ttgcttgata agttattctt ttctgaaaga aattaattta attctaaatt aaattaaatg
      301 agtggctata aatagatgtt tcgtcttcgt tgttttacaa cgaagcttag aagcttgtgt
      361 taatggcgtt aaggtatttc tctcatcttc ctgaagaact gaaggagaag attatgaacg
      421 agcacttgaa ggaaattaag aagaaggaat ttctagagaa ttcaattaga gctgcgtgtg
      481 ctgtgttcga aggtttaaca aagaaggagt ctgttgaaga agacgacata ctacgcttct
      541 ctgggtttct ggaaggtctg tctgcatatt atgcagaggc gacgaagaag aagtgtttag
      601 ttagatggaa gaagagcgtt gcaataaatc tgaaatggag agttatggag gagatgcatt
      661 acaagcttta tggatttgca gacatggaag atttatattg ttcagagtta gggtttccta
      721 attacggtga agacgatgta gcttatcacg atggtgcaat tgtaaattgt aagcaattag
      781 aagttgtatt tgatgattta ggtattgagt ttatgtctat tgtaattgat agaggttcta
      841 ttaagataga attatgagat gtaattgtga tgattaatga ataaagagtt gtttttattc
      901 tttgaattat tccgcgaagc ggtgtgttat gtttttgttg gagacatatg acgtcatatg
      961 tctccgtgcc tacgtcaggg cggggcttag tatt
//