LOCUS NC_078222 1005 bp DNA circular VRL 06-MAY-2023
DEFINITION Subterranean clover stunt virus isolate Myall Vale 2534B segment
DNA-R, complete sequence.
ACCESSION NC_078222
VERSION NC_078222.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Subterranean clover stunt virus
ORGANISM Subterranean clover stunt virus
Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE 1 (bases 1 to 1005)
AUTHORS Knierim,D., Barriere,Q., Grigoras,I., Winter,S., Vetten,H.J.,
Schwinghamer,M., Thomas,J., Chu,P., Gronenborn,B. and Timchenko,T.
TITLE Subterranean Clover Stunt Virus Revisited: Detection of Two Missing
Genome Components
JOURNAL Viruses 11 (2), E138 (2019)
PUBMED 30720711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1005)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1005)
AUTHORS Gronenborn,B., Timchenko,T., Knierim,D. and Barriere,Q.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2018) Institute for Integrative Biology of the
Cell, UMR9198, Centre National de la Recherche Scientifique France,
Avenue de la Terrasse, Gif sur Yvette 91198, France
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MK035728.
##Assembly-Data-START##
Assembly Method :: Geneious v. 10.2.3
Sequencing Technology :: Illumina; Sanger dideoxy sequencing
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1005
/organism="Subterranean clover stunt virus"
/mol_type="genomic DNA"
/isolate="Myall Vale 2534B"
/isolation_source="leaf tissue"
/host="Vicia faba; deposited at DAR Plant Pathology
Herbarium Orange, NSW, Australia; collection number DAR
76607"
/db_xref="taxon:36772"
/segment="DNA-R"
/country="Australia"
/collection_date="1997"
/collected_by="Mark Schwinghamer"
stem_loop join(988..1005,1..11)
/gene="m-rep"
/locus_tag="QK636_s8gp1"
/note="part of replication origin"
misc_feature join(999..1005,1..2)
/gene="m-rep"
/locus_tag="QK636_s8gp1"
/note="conserved nonanucleotide at replication origin"
gene 1..1005
/gene="m-rep"
/locus_tag="QK636_s8gp1"
/db_xref="GeneID:80550075"
regulatory 52..59
/regulatory_class="TATA_box"
/gene="m-rep"
/locus_tag="QK636_s8gp1"
regulatory 86..92
/regulatory_class="polyA_signal_sequence"
/gene="m-rep"
/locus_tag="QK636_s8gp1"
CDS 94..954
/gene="m-rep"
/locus_tag="QK636_s8gp1"
/function="replication origin binding and cleavage,
site-specific endonuclease, nucleotidyltransferase,
helicase"
/note="master replication initiator protein"
/codon_start=1
/product="M-Rep"
/protein_id="YP_010839896.1"
/db_xref="GeneID:80550075"
/translation="MARQVICWCFTLNNPLAPLSLHESMKYLVYQTEAGDNGTIHYQG
YVEMKKRTSLVQMKKLLPGAHLEKRRGSQGEARAYAMKEDSRVEGPWEFGEFKEVVED
KLRSVMEDMKSTGKRPVEYIEDCCNTYDKSSATLREFRGELKKKQAIEEWVLQRQPWM
DEVESLMETKDCRRIIWVYGPEGGEGKTSYAKHLVKTREAFYSTGGKTADIAFAWDHQ
ELVLFDFPRSFEEYVNYGVIEQLKNGILQSGKYQSIVKYCNYVEVIVFANFIPRSGMF
SEDRIVIVYA"
misc_feature 106..342
/gene="m-rep"
/locus_tag="QK636_s8gp1"
/note="Putative viral replication protein; Region:
Viral_Rep; pfam02407"
/db_xref="CDD:280553"
misc_feature 619..897
/gene="m-rep"
/locus_tag="QK636_s8gp1"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl38936"
/db_xref="CDD:453896"
ORIGIN
1 acccccgtgc cggggtcaga gacatcacgt gactctcata tgattgttta atatatatat
61 gtgtgttggg ttgattattt tattcaataa aatatggcta gacaagttat atgctggtgc
121 tttacattaa acaatcctct cgctcctctc tctcttcatg aaagtatgaa atacttagtt
181 tatcagactg aagctggtga taatggaact attcattatc aaggctatgt ggaaatgaag
241 aagagaactt ctctggtgca aatgaagaaa ttgcttcctg gtgctcatct ggagaagaga
301 agagggtcac aaggagaagc tagagcttat gcgatgaaag aggattcaag ggttgaaggt
361 ccttgggagt ttggagagtt taaggaggtt gtggaagata agctgcgttc tgtcatggaa
421 gacatgaaat caactgggaa acgtccagtt gagtatatag aagattgttg taacacttac
481 gacaaatctt ctgcaacgct gagagagttt agaggagaat tgaagaagaa acaggcaatt
541 gaagagtggg tgttgcagag gcagccatgg atggacgagg ttgaaagctt gatggagacg
601 aaggactgta gacgaataat ttgggtgtat ggcccagaag gtggagaagg gaagacatcg
661 tacgcaaagc atcttgtgaa aacgcgtgaa gctttttact cgacaggtgg aaagacagcc
721 gacatagctt ttgcgtggga ccatcaagag ttagtgctat tcgactttcc tcgaagcttc
781 gaggaatacg tcaattatgg agtcattgaa cagctaaaga atggcatttt acagtctgga
841 aagtatcaaa gtattgtaaa gtattgtaat tatgtagaag ttattgtatt tgctaatttt
901 attccgcgaa gcggtatgtt tagcgaggat aggattgtaa ttgtgtatgc gtgagtgaga
961 tgacgtcata tgtctccgcg acaggctggc acggggctta gtatt
//
