LOCUS NC_078358 6660 bp RNA linear VRL 06-MAY-2023
DEFINITION Parry's Creek phasivirus 1 isolate PCPV1/pool-10 segment L
RNA-dependent RNA polymerase (QK683_sLgp1) gene, complete cds.
ACCESSION NC_078358
VERSION NC_078358.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Parry's Creek phasivirus 1
ORGANISM Parry's Creek phasivirus 1
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae;
Phasivirus; Phasivirus parryense.
REFERENCE 1 (bases 1 to 6660)
AUTHORS Williams,S.H., Levy,A., Yates,R.A., Somaweera,N., Neville,P.J.,
Nicholson,J., Lindsay,M.D.A., Mackenzie,J.S., Jain,K., Imrie,A.,
Smith,D.W. and Lipkin,W.I.
TITLE The Diversity and Distribution of Viruses Associated with Culex
annulirostris Mosquitoes from the Kimberley Region of Western
Australia
JOURNAL Viruses 12 (7), E717 (2020)
PUBMED 32630711
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6660)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6660)
AUTHORS Williams,S.H., Levy,A., Yates,R.A., Somaweera,N., Neville,P.J.,
Nicholson,J., Lindsay,M.D.A., Mackenzie,J.S., Jain,K., Imrie,A.,
Smith,D.W. and Lipkin,W.I.
TITLE Direct Submission
JOURNAL Submitted (19-MAY-2020) Center for Infection & Immunity, Columbia
University, 722 West 168th St, New York, NY 10034, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MT498816.
##Assembly-Data-START##
Assembly Method :: MEGAHIT v. 1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..6660
/organism="Parry's Creek phasivirus 1"
/mol_type="genomic RNA"
/isolate="PCPV1/pool-10"
/isolation_source="pooled homogenate"
/host="Culex annulirostris"
/db_xref="taxon:2755152"
/segment="L"
/geo_loc_name="Australia"
/collection_date="26-Mar-2018"
gene complement(1..6660)
/locus_tag="QK683_sLgp1"
/db_xref="GeneID:80550459"
CDS complement(1..6660)
/locus_tag="QK683_sLgp1"
/note="RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="YP_010840043.1"
/db_xref="GeneID:80550459"
/translation="MSELLESLVIDSLSSSPGLIKTGEVANNTVSVAGIPLPLPIIEN
GTGTVNISFSPRPTADYGTSVGSSIAGTSINYSLGDYRLTNLVHDFTFNHLIAETDKK
LYKIFKHSGSEITNYSPDFVKESVLYNIVVEVGTYRGNRRSAINYFHEKRQKYESILE
VISESEKANNGNSKPILFGIIIVSRDAVITNLELSYEQMQEMQLRFLIGIRIEKTLSQ
MGLIAIVDKEATRTRKELSQFFLSLDKKTEILIEDWNKELNAKINNDPKEAVFLKAHL
LRWDEERIARLIDNDITSEAAEKILKILKKTITETIGKSRSYEFDSEVRRAKSEEEHE
KFEEEYVMMNEGNMRSDKKAFINLPFIVPMLQLPERRTSVGLKIVEPKFDTVYDVLYY
TAIVKTLNDPLYFPDKEMDLLEQYGWESPSYTSYEEAQDSIDQETQTSGLSKFINADG
LAETEIETYLHFVEIDDKKQKQLVEDYKRKTNRVQMSLTKEESFELALKGVEGKGLTT
EYIKGKVNRNYDASLDAKRKNEPDWFHIRDTDTSDMDDLMLDKKFYEDILLSVPFDSP
SLINWKLLINQARSAHGDSYVKHKEEEFVEWFSKTRIFSWGKLVSDIGTEVNISLKQN
CKKNEFVFKKLQDFNVWLLIKPTKKEEQIFFSILFDLDEVCYKKSSSVFKSLYPLYGG
SKYGYTHFISLTESKLLNWVITLPRLISLFRFWTNFAGVTPYKEELIMVESKENPDYK
NLFGEAMPMLMLSMIIGLADKTEVEEEITRTRYLVMESLEEWPIEPKPYKLVSKVSKQ
MRSRLTVWLYRKHKQLCNLYSSNPPRAKNEELYGQGQTETSSQLFWHGFINPYTHSSL
SSGQQVINLFYLGYIKNKDEVAQVNKLSKLYDKILVYEQLYNEEIAQKMGIESPEDPL
PHCFDIELLLDSCEKLKKRIKVSYPDFEAEFEKQLGKFLFRTSVEEEFSTLKASSNFG
PSLYDRKSVNERYSRSKVIEKLAKNKNDAVSISELFESQAVKCLRVRGLNIDIFRKPQ
HGGDREIYVLGFEERVVQRVIEQVARILCGFIPEETMTHPQNKTSIPENAFKEARSIY
RNNHITLNSSADASKWSQNNCSFKLLIPLLKLTPRYMHRTLIRCLRLWESKRILINPF
ILELFDKHRDLKFYDKTVQNMFDGYKGRASFRWIKPGEPFIELTTGMMQGILHYSSSL
YHSAIISRAKEVIESNNKTLVKTFGFKRPFKIVMCHLQSSDDSFFSVSCPLNGTAEVA
RRSRLLAASILSFKVNLSTQMGVVNSEVKSALATNHVFEFNSNFEFGFNHYKPDIKAV
YSGFLVSEQELILSRQEELSVLLTTYIENGGVNYVANGLQVGQSYLHYQLIGMTTTKY
FRSFQVLNTILPDPSLGFFLMDNSLCPGLLGFNYNMWNLVKTSNLGKLFKHRLRPIET
ENESLDETIKLSIELSAHGSLSSTHKIVHGNRAKWLKLLERIGARENWREDIEKNPSL
MFRRALTPLEVDTKISQKLHSPGVSASLSSLNTLPRILAESAYILKIRSITSISSWLD
PMSKHFDKVTLLEALLKEMKEILNDGHITENELKILFPFHNDFMKNQGLLETLSVKAI
ASSFREYKRKETRVEIATNNEYNLVNLRGLLLSYWFENEEEVNSVRLSRESRDYIFEQ
HKKIIPWINKDMKEALRSSPFENLVEMFTWLNTFSGRKRVIRLLGTQIISRHGHSRLL
SVVMNNLSSNFRLVTDKNEVELPISSVKLVREKFSLLAALPEDEPQKADSIIRLFSQA
GDRVSFNTETIRSRQNDVIIMSRLAKVVTEKSWRSGPREPVLQIISDMIKNKHGTLGI
FTTRQKLTIGPDGPQYHGPGRWDGIIDGFTVGFSIDNAIGEPTRVVSITTKTRLAAVE
SISIRSFIKAMGWLIPSEASYRQKNKLLLNENGINTSSGIPIIVNELYEFSLLSLFKL
DLTLKWTGRNLRCIATQDRSSYTVMSVAPKAQHADYSNHSLGFLSELKFDKFTTEWVR
NKSLSIAEASKLINNFYSLPDEKQLLVRTNLKAKFENQGVKKLTGTAVLSLAYVSQQE
VDFDVDQFILELESMDAGDFITEDFKADLASPPEIVEEEDFDFHNIEGLTEILYETTN
EEYGIDLLKREAWRMHHLMDNFVKFIIESVGRDAINKLIESRVFSEVLTNYQRVFEIL
LNESKSEWKELKLKTLDELQIEEDDDDVE"
misc_feature complement(2422..4566)
/locus_tag="QK683_sLgp1"
/note="Bunyavirus RNA dependent RNA polymerase; Region:
Bunya_RdRp; pfam04196"
/db_xref="CDD:282102"
ORIGIN
1 tcattcaaca tcatcatcat cttcctctat ctgcagttca tcaagagttt tcaacttaag
61 ctctttccat tcagatttgc tctcatttaa cagaatctca aacactcttt gataattagt
121 cagaacttca gagaaaactc ttgattcaat taatttattt attgcatccc ttccaacact
181 ctctattatg aacttcacaa agttatccat tagatggtgc atcctccatg cttctctctt
241 taataaatct ataccgtatt cctcattagt tgtttcatac aaaatctcag ttaaaccctc
301 aatgttgtgg aagtcaaagt cttcttcttc cacaatctcc ggcgggcttg ccaaatcagc
361 cttgaagtcc tcagttataa aatctcctgc atccattgac tctaattcca gaatgaactg
421 gtccacatca aagtcaacct cctgctggga cacatatgcc agactgagga cagcagtccc
481 agtgagtttc ttcacacctt gattttcaaa cttagcttta aggttggttc tcacgagtag
541 ctgcttttcg tcaggcaatg aataaaagtt attgatgagt ttgcttgcct cagcaattga
601 tagggatttg ttcctgaccc attctgttgt gaatttgtca aacttcagtt cagacaggaa
661 tccaagagag tggttgctgt agtctgcgtg ctgggctttt ggagcgacac tcatgacagt
721 gtaggaggac ctgtcttgag tagctatgca ccttaagttt ctacctgtcc attttaaagt
781 taagtcaagc ttaaaaagag aaagaaggct aaactcataa agctcattga ctattatcgg
841 tattcctgaa gatgtattta ttccattctc atttagcagt agtttgttct tttgtcgata
901 agatgcttca cttggaatca accagcccat tgcctttatg aatgaacgaa tggaaatgga
961 ttcaactgct gccaatcttg tctttgttgt tatggataca accctggttg gttctccaat
1021 tgcattatct attgaaaacc caactgtgaa accatcaatt attccatccc atcttccagg
1081 cccatggtat tgaggtccat ctggtcctat ggttagtttc tgccttgttg tgaaaatgcc
1141 cagagtgcca tgcttgttct taatcatatc tgaaattatt tgaagcacag gttccctggg
1201 accagacctc catgacttct ctgtaacgac cttagctaat ctactcataa tgatcacatc
1261 attctgtctg gacctgatgg tctcagtatt aaaagaaact ctatcacctg cttgagaaaa
1321 gagtctaatt atactatctg ctttttgagg ctcatcttct ggtaaagctg ctagtaaaga
1381 aaatttctct ctcactaact tgacactact gattggcagt tctacttcat ttttatcagt
1441 aactaaccta aaatttgaag aaagattgtt catgacgaca gaaagtagtc tgctatgacc
1501 atgtcttgaa atgatttgtg tgcctaaaag tctgatgacc cttttcctcc cggagaatgt
1561 gttcaaccaa gtgaacatct ccactagatt ttcaaaaggt gatgacctaa gagcttcttt
1621 catatctttg ttaatccatg gaattatctt tttgtgttgt tcaaatatgt aatcccttga
1681 ttccctgctc agtctaactg aattaacctc ttcttcattt tcaaaccagt aagagagcaa
1741 caaccctcta agattgacca ggttgtattc attattagtt gcaatctcca cccttgtttc
1801 ctttctcttg tattctctga aggaagaagc aattgcttta acactaagtg tttctaacaa
1861 cccttggttt ttcatgaaat cattgtggaa gggaaatagg attttcaatt cgttttcagt
1921 gatgtgacca tcatttagaa tctccttcat ctcttttagt agtgcctcga gcagcgtcac
1981 tttatcgaaa tgtttagaca taggatctag ccaactacta atagatgtta tggatcgtat
2041 ctttagaatg taggcactct ctgccaagat tcttggtaat gtgtttaagc tgctaagtga
2101 tgctgagact ccaggagaat gtagtttttg agaaattttt gtgtctacct ctagaggagt
2161 taaagccctc ctgaacatta gagatgggtt tttttcaatg tcttctctcc agttttcccg
2221 tgctccaatt ctctccagca gttttaacca cttagctcgg tttccatgaa caatcttatg
2281 agtgctagat aaagagccat gagctgaaag ctctatagat agcttaattg tttcatcaag
2341 gctctcattt tctgtttcta ttggtctgag tctatgcttg aatagctttc ccaagttgct
2401 agttttgact aaattccaca tattataatt gaagccaagt aaacctgggc ataaactatt
2461 atccattaag aaaaacccaa gactggggtc aggtagaatg gtgttaagaa cttgaaatga
2521 tctaaagtac ttggttgttg tcatccctat caactggtag tgcaggtaac tttggccaac
2581 ttgcaaaccg tttgcaacat aattgactcc tccattctct atataggtag taagcagaac
2641 gctcaattcc tcttgcctgg agagaattaa ttcctgctct gacactaaaa agccagagta
2701 cacagcctta atgtcaggtt tgtaatggtt aaatccaaat tcaaaatttg agttaaactc
2761 aaagacatga ttggttgcca gtgcactctt gacttctgaa ttaacaactc ccatttgggt
2821 tgagaggttc accttaaagg acaagattga tgctgctaac agtctggacc gcctcgctac
2881 ctctgcagtc ccatttaaag gacagctaac gctgaaaaat gagtcatctg aagattgcaa
2941 gtggcacata acaatcttaa aaggcctttt gaagccgaat gttttcacta atgttttatt
3001 gttgctttct atgacctcct ttgctcggct tataattgct gaatgataaa gagaggaact
3061 ataatggaga atcccttgca tcatcccagt agtcaactca atgaatggct ctcctggctt
3121 aatccatcta aaagatgccc tgcctttata accgtcaaac atgttttgga cagttttatc
3181 ataaaatttc aagtctctgt gtttgtcaaa caactcgagt atgaatggat tgattaaaat
3241 tctttttgat tcccatagtc tgaggcacct aatcagagtt ctgtgcatgt atctaggagt
3301 gagctttagc agtggaataa gtaatttgaa actgcagttg ttttgactcc attttgaagc
3361 atcagcagag ctattaagag taatgtggtt atttcggtag atgctccttg cttctttaaa
3421 tgcgttttca gggatagaag tcttattctg agggtgtgtc attgtttctt caggtatgaa
3481 gccgcagaga attctggcta cttgctcgat gactctttga accactcttt cttcaaatcc
3541 caaaacataa atttctctat ctccaccgtg ttgtggcttg cggaaaatgt caatgtttag
3601 ccccctaact cttaaacatt taactgcctg actctcaaac agttcagata tggagacagc
3661 atcatttttg ttctttgcta gcttctctat gacttttgac cttgagtatc tttcattaac
3721 agatttccta tcatataatg aaggcccaaa attgctagat gctttaagag ttgagaactc
3781 ctcttcaaca gatgttctaa ataagaattt tcctaattgt ttctcaaatt ctgcctcaaa
3841 atcagggtaa ctgactttta ttctcttttt caatttttcg caactgtcta acaacaactc
3901 aatatcaaag caatgaggca gtgggtcctc aggtgattca atacccatct tttgagctat
3961 ctcttcattg tacagctgtt catagactag tattttatca tatagtttac tcagcttgtt
4021 cacttgagca acctcgtctt tattcttgat ataccctaga taaaacagat ttataacttg
4081 ttgtccagag ctcaatgagg agtgagtgta agggtttata aaaccgtgcc aaaacaattg
4141 gctgctagtt tcagtttgcc cctgcccgta taattcttca ttcttggctc taggtggatt
4201 acttgagtag aggttacaca gctgcttgtg ctttctgtat agccacacag ttagtctgct
4261 tctcatctgc ttggatacct ttgaaaccaa cttgtagggt ttgggttcaa taggccattc
4321 ttccaagctt tccatcacaa gataccttgt cctcgttatt tcctcttcaa cctctgtttt
4381 gtctgccaga ccaatgatca tggatagcat taacataggc attgcttcac caaacaggtt
4441 cttgtagtca ggattctctt tcgactcgac cattataagc tcttccttat aaggcgttac
4501 accagcaaag ttagtccaaa atctgaagag agagatcaat ctgggcagag ttatgaccca
4561 attcagaagc tttgattctg tcaagctgat aaaatgagtg tagccatact tagacccccc
4621 atacaatgga tacaagctct taaaaacact tgaagacttt ttataacaga cctcatctag
4681 atcaaataaa atggagaaga atatttgctc ttccttcttt gtgggtttta ttaacagcca
4741 gacattaaag tcctgaagtt tcttaaacac aaattcattc ttcttacagt tttgcttcag
4801 gcttatatta acttctgttc ctatgtctga gaccaacttt ccccagctga agatcctcgt
4861 cttgctgaac cactccacaa attcttcttc tttatgttta acatatgaat caccatgagc
4921 agatctagct tgatttatca acaacttcca atttattaag cttggggaat caaatggtac
4981 acttagtaag atgtcttcgt aaaacttctt atcaagcatg aggtcatcca tatcagatgt
5041 gtcagtatct ctaatgtgaa accagtctgg ctcattctta cgcttagcat cgagagatgc
5101 atcataatta cgattaacct tgcctttaat gtactcagtc gtcaaccctt taccttccac
5161 accttttaaa gccagttcaa agctctcttc cttagtcaat gacatttgaa ccctattggt
5221 tttcctctta taatcctcaa caagttgctt ctgcttcttg tcatcaattt caacaaagtg
5281 taaataagtc tctatttcag tttcagccag tccgtctgca ttaatgaact tggataggcc
5341 agaagtttgc gtttcttgat ctatcgagtc ttgagcctct tcataagaag tgtaacttgg
5401 tgactcccaa ccatattgct ccaaaagatc catttccttg tcaggaaaat ataaagggtc
5461 attcaaggtc ttcacaatgg ctgtataata caaaacatca taaactgtgt caaacttagg
5521 ctcaacaatc ttaaggccaa cagatgttct cctctctggg agttgtaaca ttggcacaat
5581 aaaaggtaaa ttgatgaatg cttttttgtc actcctcatg tttccttcat tcatcataac
5641 atattcttct tcaaactttt catgctcttc ttcactcttg gctcttctca cttctgagtc
5701 aaactcatat gaccttgact ttcctatggt ctcagtaatt gtttttttaa gaattttaag
5761 aattttttct gctgcttcac tagtgatatc gttgtcgatg agccttgcaa ttctttcttc
5821 gtcccatctg agtaggtgag ctttaaggaa gactgcttct tttggatcat tatttatctt
5881 cgcattcaat tctttgttcc agtcttctat taagatttca gttttcttat ccaagctcaa
5941 gaagaattga cttagctctt tcctagttcg agttgcctcc ttatctacta ttgcgattaa
6001 acccatttga gacaatgttt tttctattct tatacctatg agaaatctca gttgcatctc
6061 ctgcatctgc tcatagctta gctccaaatt tgttatgaca gcatctcttg agactataat
6121 tatcccaaaa aggattggct tagaattgcc attatttgct ttctcactct cagaaatgac
6181 ttcaaggatg ctttcatact tttgtctctt ctcatggaaa tagttgattg ccgaccttct
6241 atttcctctg taagtcccaa cttctaccac tatgttgtac aaaacagact ctttaacaaa
6301 atcaggagaa taatttgtaa tttcagatcc tgaatgcttg aatattttat acagtttctt
6361 atcagtttct gcaatcaggt ggttgaaagt gaaatcatgg actaagttgg ttaacctgta
6421 atcccctaaa ctataattta ttgaagtgcc tgctatgcta ctccctacgc tagtaccata
6481 gtcagcagtt ggccttggag aaaatgaaat attcacagtt cctgtgccat tttctatgat
6541 tggcaagggg agagggatgc ctgctacact aactgtgttg ttagcaactt ctccagtttt
6601 gatcaatcca ggtgaactgg acagagaatc aataactaag ctctccaaaa gttcagacat
//
