LOCUS NC_078825 7537 bp RNA linear VRL 06-MAY-2023
DEFINITION Potato black ringspot virus isolate TRSV-CA segment RNA1
polyprotein (QK781_s1gp1) gene, complete cds.
ACCESSION NC_078825
VERSION NC_078825.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Potato black ringspot virus
ORGANISM Potato black ringspot virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
solani.
REFERENCE 1 (bases 1 to 7537)
AUTHORS Jones,R.A.C., Boonham,N., Adams,I.P. and Fox,A.
TITLE Historical virus isolate collections: An invaluable resource
connecting plant virology's pre-sequencing and post-sequencing eras
JOURNAL Plant Pathol 70 (2), 235-248 (2021)
REMARK DOI: 10.1111/ppa.13313
REFERENCE 2 (bases 1 to 7537)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 7537)
AUTHORS Jones,R.A.C., Boonham,N., Adams,I.P. and Fox,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2020) Plant Protection, Fera Science Limited,
Sand Hutton, York, North Yorkshire YO411LZ, UK
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MT922050.
##Assembly-Data-START##
Assembly Method :: Trinity v. 2.8.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..7537
/organism="Potato black ringspot virus"
/mol_type="genomic RNA"
/isolate="TRSV-CA"
/host="Solanum tuberosum"
/db_xref="taxon:257464"
/segment="RNA1"
/country="Peru"
/collection_date="1976"
gene 91..7065
/locus_tag="QK781_s1gp1"
/db_xref="GeneID:80551751"
CDS 91..7065
/locus_tag="QK781_s1gp1"
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="YP_010840564.1"
/db_xref="GeneID:80551751"
/translation="MGFICPNLDCLGNKTVFSRKDLRDEGLTFSMRCPRACCGALLRK
QEDIEVVDSATTSRKSLDSAKPKCLCWHKSYGLARCPKHQGVAPVQTVSFGDEEVFTL
VTPTPVAPATKSKSAPSAPLLKKQNCDVVVAMGPPVDLEFVYPALCGKGSAPTTKAVK
KSSAEVLLEKRAAYQAKHAVPTPGPVRVVKTAATPVKVEKIQFPRGAVVYNGTNFFDA
KGNVVLSAAALKILRGVKRLRSQAVRAERRQRICKKIRLAAFAAKVPELLRRASEATS
GGFRYNDLNAPKCADSVARPRFSRKGKKTKSVQCTARSASPVQEEINWDDWIIPESER
TASPVKEEKTKQPLVPLSLGFGWWRPASGKLWTQVVHCMRAVKGTPIAVPCEKFLCAA
GADDTALSVWARISSSVVDLAAHYSFDILLENYTALEGCTMDELQSVAVQLDSEYQEM
GPPTHHTCGLSSWARGAGKLMADFITPSLNAMKGAANAVIDRAYLLTKDVIDGIFSQL
KKLFYDSFGHLLGHLNVLLSTVDSFWQRASTWVMNILEKTHDAIKVLRDASVWSLLLI
LVGGMILLSERFLVSVGVITQPGTILGIFLATFLGIFGYTFFKKDDTLVSDLLWVFKT
AITGLFRTKPGPPGSPIIIDGDVVIPEPATSMSTCSLLGGLDIAIAAIGSVGSSILTF
KMGTLQYAAKIATCLDQLRKGKDVLKEMTCWLIETLGQLWNKVTGREATFFDEVSAIV
AVDIREWLQESQDLCLAAQTFSIGDKIVLEQCERLIADGHKLLRGMGDADRKLSASFL
STIQRKVSDLEKIHTQSVRAGYFEGRRMEPFWVYIHGPSHCGKSLLMEPMSRELLKAG
GFSEASIYTKNSCDKYWSRYRRQACVQIDDLSAGKTDPSLETQLINLVASKEVPLDMA
EVEDKGILFDSSILVTSSNTSSVPTNANINHVSAYNNRQGCIIMCRQKPEYSPLGMEL
EGTFQPFDPRNPQASVECMLQRWEKDILIPVTGWISAGAAMAEAVNKFRLHREKEMIL
QNNHLSSFRPAHPIYTECATFLSMYSRDASFVPPVDLGCKWNVPTGYLSIAAVDGRTF
GFTQFGVCEEISHILKYTEEMEAYTLEKFAPTITRTLASQSRYKLVGAFLKGMVRDED
NVMSLKSLGPKSTSTQREFFETLGIGERVYLRAVQKRINKINNEPAFNVDNLHAKLLN
SVVSSYEYVKEKGPKIFPLLMGFIVVVFACYGFVMPLLSFASGGSAVGGMVAMEQMTA
ASVISSGSSPVHHRSRAPPIQPRYARHRLAGSAPDESYAYEELMVVLYVDSTIAPVVN
AVRGPGRSIFITEHQAMAIPNNSTVVAHLSTKDVVEIHWEHSVAMKGKVKETEIVQYR
CPSIPELPARLRGYFEYDLERDLPGPFTLRASVYRMKSPGKIDLELVDWTNHDAELKT
KALVISDPFGEDRYRREYPRYISYRRSAQLHDCGAICVAQIGGQYRVVGLLISTDKYN
TGVGLLPSALHMTTCSLTYVPEEWEDAPRGLKKLGWKHVSELPHMPRKTQYELVNESI
RIPFENPKIPSVLVADDPRTIGTPVEGQDPVLKAMEKFYEPMLNFDETPVANSTEMAI
FESVCDDIVQTWYDAGADFEDVDDDVVINGDDEFDKLIMDTSEGYPYVLERSRGEKGK
TRYFEGGPGAYTLKPGTSVYRDYHTLQEEVSVEGGIPEMVCIECPKDELLVPRKVLEK
LGTRNFEILELPKNMLFRKKFLSWASFLSEMRWCLPCQVGIVVQGREWGLLLDRLSEK
NSVAYNCDYSKFDGLMSCQVLDAIGKMVNKCYANTNPNKKGRGEVPGSPPQLARHNLL
MSIFGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIRYVYKTVVPSPEFNRFET
FVTLAVYGDDNLIAVDPVMANAFTGEVIKRTLARKGITITDGSDKLSPTLEAKPLSQL
DFLKRSFLVSSSGQVMPALDRTCIYSSLLYLSSKGADPIPLLHQNVQNALQEMYHRQD
RAEFDTLRNFYLERCPTWRSGPNRLLDYNQCHAHWISRYTGQPNSNPAGVVDMLVDPR
HKSFLLPAGPANWSMPVADGIFVCGPKFFPNAPSFTICFNRLAAGETGIEIKPVHAAT
QGAMPTGKFVKSFRSMKKRPELELALAAKDAGSAIYFKGCAPYNDIWACAIAFCSAFG
FADKQVLLAVHDNSKPIGASSLRSYFNGNLAGDGCARRLEVHSKAGQFAAVQRLAPTM
QCKQIVYDPDFASKPTTHLRKCTDHGTDGGKALYIVQGLGVTAAKLVCTDLCDGHVVS
CSNNFDRMVKDVLSQSCF"
misc_feature 2581..2889
/locus_tag="QK781_s1gp1"
/note="RNA helicase; Region: RNA_helicase; pfam00910"
/db_xref="CDD:425942"
misc_feature 5209..6174
/locus_tag="QK781_s1gp1"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:454764"
misc_feature 5449..5493
/locus_tag="QK781_s1gp1"
/note="conserved polymerase motif A; other site"
/db_xref="CDD:438017"
misc_feature order(5677..5727,5731..5748)
/locus_tag="QK781_s1gp1"
/note="conserved polymerase motif B; other site"
/db_xref="CDD:438017"
misc_feature order(5794..5805,5809..5838)
/locus_tag="QK781_s1gp1"
/note="conserved polymerase motif C; other site"
/db_xref="CDD:438017"
ORIGIN
1 aatatttgtg ttgctacccc ctctttctct cttaattgtc tttgaaactg atcaacaacc
61 ccctctttcg aattgttccc caatttttta atgggcttta tttgccctaa cttggactgt
121 cttggcaaca agacagtctt ttctcgtaag gacctcagag atgagggcct tacttttagc
181 atgcgctgtc ctcgcgcatg ctgcggagct ttgctccgta agcaagagga tatcgaagtt
241 gtggatagcg ccacaacatc ccgaaagagc ttggatagcg ccaagccaaa gtgcctttgc
301 tggcacaagt cctacgggct cgcccggtgc cctaagcacc agggcgttgc cccagttcaa
361 accgtctcct ttggagacga agaggtgttc actcttgtga cacctactcc cgtggctcct
421 gccacaaaat ccaaatctgc tccctctgct cctcttctca agaagcagaa ttgcgacgtc
481 gttgtcgcaa tgggtcctcc tgtggatctg gagtttgtct accccgctct gtgcgggaag
541 ggttctgcgc ctaccacaaa ggcggtcaag aagtcctcag ctgaggtact tcttgagaaa
601 cgtgcggcct atcaggctaa gcacgctgtt cccacccccg gtcctgtccg ggtagttaag
661 actgctgcca ccccagttaa ggtggagaaa atccagttcc ctcgcggagc tgtggtttat
721 aatggcacca atttttttga tgccaagggc aatgttgtcc tgagtgctgc tgcactcaaa
781 atcttgagag gcgttaaacg cctccgttct caggcggtcc gtgctgaacg ccgccagcgt
841 atctgtaaga agatacgtct tgcagccttt gctgctaaag tcccggagct tttacgccgg
901 gcatctgaag ccacatctgg tggtttcaga tacaatgatc tgaacgcgcc gaagtgcgca
961 gattccgtgg cgaggccacg tttttcccgc aagggaaaga aaacaaagtc tgtgcaatgc
1021 acagccaggt ctgcctcccc tgttcaggag gaaattaact gggatgattg gatcattcca
1081 gaatctgaga ggactgcctc ccctgtgaag gaggaaaaaa ccaagcagcc cttggttccc
1141 ctgtctttgg ggtttggctg gtggcgacca gctagcggga aactgtggac acaagttgtc
1201 cattgcatgc gtgccgttaa aggcacccct atcgcagttc cctgcgagaa atttctctgc
1261 gccgctggtg cagatgacac tgccctctct gtttgggcaa gaatttccag cagtgttgtt
1321 gacttagcag cacactattc ttttgacatc ctgctggaga actatactgc tctggaaggc
1381 tgcacgatgg atgaactcca aagtgttgct gtccagttag actcggagta ccaggaaatg
1441 ggaccaccca cacatcacac atgtggcctg tcttcctggg ctcgcggagc tggaaagctt
1501 atggcggatt tcatcacccc gtcattgaat gctatgaaag gtgcagcgaa tgctgtcatt
1561 gaccgtgctt atctactgac taaagatgtt attgacggaa tcttctctca actgaagaaa
1621 ctgttctatg acagctttgg acatttgtta ggtcacctga acgtgctcct ttcaaccgta
1681 gattcctttt ggcaacgtgc ctcaacgtgg gtaatgaata ttcttgagaa aacccatgat
1741 gccattaagg ttttgcgtga tgcttccgtc tggtctttat tgcttatatt agtaggcgga
1801 atgattttac tctcggaacg ttttctagtg agtgtcggtg ttattactca acccggcaca
1861 attcttggca tttttttggc cacgttcctc ggaatttttg gatacacctt cttcaaaaag
1921 gatgatactc ttgtatcgga tttgttgtgg gtgtttaaaa ctgctattac tggtttgttc
1981 cgaacaaagc ctggtcctcc aggatctcca atcattattg atggagatgt cgtcattcca
2041 gagcccgcca cctcaatgtc tacatgtagt ttgttaggtg ggcttgatat agcaattgct
2101 gctattggta gcgttggatc ctcaattctt acatttaaga tgggaacgct tcagtatgca
2161 gccaaaatcg ccacatgtct tgatcaatta cggaagggca aagatgtcct taaagagatg
2221 acatgttggc tgatagaaac cttgggccaa ctttggaaca aggtaacagg aagagaagcc
2281 acattctttg atgaggtctc tgctattgtt gcagttgaca ttcgtgaatg gcttcaggag
2341 tcccaggatc tgtgccttgc tgcacaaacc ttttctattg gtgataagat tgttcttgaa
2401 caatgtgaac gtcttattgc tgatggccat aagttgttgc gtggcatggg ggatgctgat
2461 aggaaactgt cggcctcctt tctgtctaca atacagcgaa aggtttcaga cctggagaag
2521 atacatactc agtcggtccg agctgggtat tttgaaggaa gaaggatgga accattttgg
2581 gtttacatcc acggaccctc ccattgtgga aagtcattgc tcatggagcc catgtctcgt
2641 gagttactga aagcgggagg cttttctgag gcgtcgatat acacgaagaa ttcgtgtgat
2701 aaatattggt cacggtatcg acgccaggct tgtgtccaga ttgatgatct gtcggctggt
2761 aaaacggatc catccttgga aacccagctc attaatctag ttgcctcaaa ggaggtgccc
2821 cttgatatgg cggaagtgga agataagggt atactgtttg acagctcaat ccttgtcacc
2881 tcttcaaata catccagcgt gccaacaaat gcaaacatta atcatgttag tgcatacaac
2941 aataggcaag gatgtataat tatgtgccgg caaaagcccg agtacagtcc attggggatg
3001 gaactggagg gcacattcca gccctttgac ccgagaaacc cacaggcctc tgtagaatgc
3061 atgttgcaac gatgggaaaa agacatcctt attcctgtca ctggctggat ttctgcgggt
3121 gctgctatgg cggaggcagt caataaattc cgtctgcatc gcgagaagga gatgatatta
3181 cagaataatc atctatcctc cttccgtcct gcccatccca tttacaccga gtgtgccaca
3241 tttctctcaa tgtattcacg ggacgcaagt tttgtgcctc ctgttgatct cggttgtaag
3301 tggaacgttc ctaccggcta cctgtccatt gctgcggtgg atggtaggac ttttggcttt
3361 acgcagtttg gtgtctgcga agagatctcc catattttga aatatactga ggagatggaa
3421 gcgtacaccc tggagaaatt cgccccaacg ataacgcgaa cattggctag ccaaagccga
3481 tacaagttag tgggcgcttt tctcaaagga atggtccgag atgaagacaa tgtgatgtca
3541 cttaaatctc ttggaccgaa gagcacgtca acccagcgcg aattttttga aacgcttggt
3601 attggggaac gtgtgtattt gagggcagtg cagaagcgca ttaataagat taataatgag
3661 cctgccttca atgttgacaa cctgcatgca aaactgctga attcagtggt ttcttcatac
3721 gaatatgtga aggagaaagg tccaaagatc tttccccttc tcatgggatt tattgtagta
3781 gtttttgcat gttatggatt tgttatgccc ctcctctcgt ttgcctcggg aggttctgct
3841 gttgggggca tggtggccat ggaacaaatg actgctgctt ctgttatttc ttcaggaagc
3901 agcccagttc accaccgatc aagggcacca ccaattcagc cgcgctatgc acgccacaga
3961 cttgctggtt ctgcaccaga tgagtcttat gcctatgagg agctgatggt ggttttatac
4021 gttgactcga ctattgctcc agttgtcaac gctgtgcggg gtcctggccg ttccattttt
4081 attacggaac accaagcaat ggccataccc aacaactcta cagttgttgc acatctcagc
4141 accaaagatg ttgttgagat tcattgggag cactctgtgg cgatgaaggg gaaggtgaag
4201 gagactgaaa ttgtacaata tcgatgtcct tcaatccctg aattgcctgc taggttgcgc
4261 ggttattttg aatatgattt agagcgcgac cttcctggac cttttactct cagagcgagc
4321 gtttatcgta tgaagagtcc aggtaaaatt gatctggagt tggtggattg gactaaccat
4381 gatgctgagt tgaaaactaa ggcactggtt atttctgatc cttttggtga ggaccgttat
4441 cggcgagaat atccacgata tatctcctac cgccgatcgg cccaactcca tgactgtggg
4501 gctatctgtg tggcccaaat tggcggacaa taccgtgttg ttggattgtt aatttccaca
4561 gataaataca acactggtgt tggccttcta ccctcagcat tgcacatgac aacgtgttcc
4621 ttaacatatg tgcctgagga atgggaggat gcgccacgtg gcctgaagaa gttggggtgg
4681 aaacatgttt ctgagttacc ccatatgcca cggaaaaccc agtatgaact ggtcaacgag
4741 agcattagga ttccttttga aaatcctaaa atccctagtg ttcttgttgc tgacgatcct
4801 cgtactattg gtactccagt agagggtcag gatccagtcc ttaaagcgat ggagaaattt
4861 tatgagccaa tgctcaattt tgatgaaact ccagtcgcta atagcaccga aatggcaatt
4921 tttgagtcag tttgcgatga tattgtgcag acttggtatg atgccggtgc tgattttgag
4981 gatgtggatg atgatgtcgt gatcaatggc gatgatgaat ttgataagct gatcatggac
5041 acatcagaag gataccccta cgtgcttgag cggtcacgtg gtgaaaaagg caaaacccgc
5101 tattttgaag gtggtcctgg agcttacact ttgaaacctg gtacttctgt gtaccgtgat
5161 tatcatacgc tccaggaaga agtctcggtt gaggggggca tacccgagat ggtatgtata
5221 gaatgcccca aggatgaact tcttgtgcca aggaaagttt tagaaaaact tggcacgcgc
5281 aattttgaga ttttggaact tcccaagaat atgcttttta gaaagaaatt cttgtcttgg
5341 gcttcgttcc tttcagaaat gcgctggtgt ttaccctgcc aggttggtat tgttgttcaa
5401 ggcagagaat ggggcttgtt gttggaccgt ctttcggaga agaattcagt tgcttacaac
5461 tgtgattatt caaagtttga tggtttgatg tcatgccaag ttcttgatgc tattggcaaa
5521 atggttaata aatgttatgc caataccaat ccaaataaga agggcagggg agaagttcct
5581 gggagtccgc cccaattagc acgacacaat ttattgatgt caatctttgg gcggaagtgt
5641 cttgcacgta gccaagtttt tgaggtgcgt gggggcatac caagtggttg tgcacttacc
5701 gtgttgctaa actcagtttt taatgagatt ttgatacggt acgtgtacaa aacggtggtt
5761 ccaagtccag agtttaatcg gtttgaaacg tttgtaactc tggcagtcta cggagatgat
5821 aacctcattg cagttgatcc tgtgatggcc aatgctttta ctggtgaggt tatcaaaaga
5881 actctagcta ggaagggcat cactattact gatggtagtg acaaactttc cccaacactt
5941 gaggcaaagc ctctatctca gctagacttc ttgaaaagga gcttccttgt cagtagctcc
6001 gggcaagtga tgcccgcttt ggatagaaca tgcatttatt cttcattgct ttatctttct
6061 tccaaagggg cagacccaat accactcttg caccaaaatg tacaaaatgc tttgcaagag
6121 atgtatcacc gtcaagacag ggcggaattt gacactctca ggaattttta tcttgagaga
6181 tgtcctactt ggagatccgg gccaaatcgt ttacttgatt ataatcaatg tcatgcccat
6241 tggatctcgc gttacactgg ccagccaaac tccaatcctg ctggagtcgt tgatatgctt
6301 gtggacccaa ggcataagtc ttttcttttg ccagccggtc ccgctaattg gtctatgcca
6361 gtggcagatg gtatttttgt ctgtgggccc aaattctttc caaatgcgcc ctcatttacc
6421 atttgtttta atcgtttggc tgcaggagaa actggcattg aaattaagcc agtacacgct
6481 gctacacaag gagctatgcc taccggcaaa tttgttaaaa gcttccgtag catgaagaag
6541 cggcccgaat tagaacttgc tttggccgcg aaggatgctg ggagcgcaat ctattttaaa
6601 ggttgtgctc catacaatga tatatgggca tgtgctattg ccttctgctc tgcttttggt
6661 tttgctgata agcaagttct acttgctgtt catgacaatt ccaagcccat tggtgcttct
6721 tcacttagaa gttatttcaa tggcaatctt gcaggcgatg gttgcgcccg taggcttgag
6781 gtgcattcta aggctggaca atttgccgct gtccagcgct tagcacctac gatgcaatgt
6841 aaacaaattg tgtatgatcc cgattttgca tcgaaaccca ccacacattt gcggaaatgt
6901 actgatcatg gtactgatgg tgggaaggca ttgtatatag tgcaaggttt gggtgttaca
6961 gccgcaaaac ttgtatgtac agacctctgt gatggacatg tcgtttcatg ttctaataat
7021 tttgaccgta tggtcaagga tgtcctgtca cagtcttgtt tttagtttgt ttgctgatct
7081 taattgattg gccttctttt ctttgagtca agtaaccagg agcagccctt ctgactttaa
7141 ttagttggaa acattgttgt acgcgttggt tactttaggt aaatacgggc tttaactagt
7201 tcgttttagt tttcccgacc ctactgggtt ggtcctgtcc ttaggtggat ggggaagctg
7261 tataaactct gagttcaagg gtgtgagagc ctttgttcca gtctgtcagc tgctgtgtta
7321 aatgagcttt ctaccgggct agctcaaccg gtgcacagtg aacactactg aagtggcgag
7381 tgagtagcca aacttccggg gtaaatccct agttaacaaa atgtgttagg acgttgtttc
7441 tgacagcttt gttggtccta ttgagttttc taaagctgtt ttgtgtttgt gtttgtttga
7501 ttttcttttc gtttgcttgt tttatttact tgctttc
//
