LOCUS NC_078826 3832 bp RNA linear VRL 06-MAY-2023
DEFINITION Potato black ringspot virus isolate TRSV-CA segment RNA2
polyprotein (QK781_s2gp1) gene, complete cds.
ACCESSION NC_078826
VERSION NC_078826.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Potato black ringspot virus
ORGANISM Potato black ringspot virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus
solani.
REFERENCE 1 (bases 1 to 3832)
AUTHORS Jones,R.A.C., Boonham,N., Adams,I.P. and Fox,A.
TITLE Historical virus isolate collections: An invaluable resource
connecting plant virology's pre-sequencing and post-sequencing eras
JOURNAL Plant Pathol 70 (2), 235-248 (2021)
REMARK DOI: 10.1111/ppa.13313
REFERENCE 2 (bases 1 to 3832)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-MAY-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3832)
AUTHORS Jones,R.A.C., Boonham,N., Adams,I.P. and Fox,A.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2020) Plant Protection, Fera Science Limited,
Sand Hutton, York, North Yorkshire YO411LZ, UK
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to MT922051.
##Assembly-Data-START##
Assembly Method :: Trinity v. 2.8.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3832
/organism="Potato black ringspot virus"
/mol_type="genomic RNA"
/isolate="TRSV-CA"
/host="Solanum tuberosum"
/db_xref="taxon:257464"
/segment="RNA2"
/country="Peru"
/collection_date="1976"
gene 117..3365
/locus_tag="QK781_s2gp1"
/db_xref="GeneID:80551754"
CDS 117..3365
/locus_tag="QK781_s2gp1"
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="YP_010840565.1"
/db_xref="GeneID:80551754"
/translation="MELLCRQADATLPRNVQHIGTPLSRVASAMAFFKKAARQFSKQA
DACDLAALAMERVAEHNGITVTAANIQQLFEFVGQHVADPDERKALRGALREQRKAFR
ASLPGACFPMPRPIPSPPPLPTFVVVKRPRFRVVAPPPFIPRAPPLPHFKKVVRPNFV
VVAPPPPPEVYQSPGAPFPLGRSDQALRFFKLAATCRQTLVCAVAEQPALMHCCASTG
EVQEMTAMLTEARQSGKILTPKEVTSALALKRKEIKGAEENRISFDEGVHLSESDVFH
RLSLTKRYLAPKRDRTLVDVLMPTEHETVRYPGTRPDGTLQMCVSALPRMSEEAARKL
LEKGWKNSKNVSLDIGVTSYMPYGAPIVAFMTIMDGRTTDPQEAALCANYMDLGREKS
KVLSLPLVTIPLSEIEHDTTILDCLYIVTYFHGVQSYQPGTLMLSYGTLEFQEYSNNS
FTTATRVRESWDQILQRNSNLGKRVHAGIGVLGTIEKEMDQALPDFPQIDLQVRPQPV
VRTFQETARPQLACRSMRIGTTSFTGNTGRKSLDVVHKWQDVPSGSSSIPPLPRHSDH
SFTAPTVVVDPSCCGHLSFKVPKDAKKGTHLGTLDMAAAINAYGGAHAQNWWAKGVLN
PCFTVRLHAPKNAFAGLSIACTFDNYKRIDLATLGNSCPVQEMFEFPTKVFVLKDADV
HEWTFTYGDLTGHGLVQWTNTVTQPKLFFYVASTNQVTMAADWNCVTTLHMVDGDDEP
RFELEPTITWPITCRNSFNIDRYYEAKEIKLDGTTTFLSIEYNFGGPIKASVKSSISF
SRAVMAQCLGWSGTISGSVKSVSSLFCSASYILFPWAWDAPPSLHDVLWGPHQIMHGD
GDFEIAIKTSYKSTPTMMAGVGRLGILPLSGPVAPDAHVGAYEFFVHIREWVPDEQIH
PPIFSTQDVYNWITISTVTPDAVSGVWETTIPGYIHDYADKNAVVSLSSNPLSWLVAA
TGWHFGEVDLCFSWARTGKAADQESIVSIAVCYSDYDKRIRGNTRTFDVRNTSYEVPY
FLGSYAGATPSGPLGDQNYIRISVINAKTLMAMRIGIRPRSLSFWGRTATLF"
misc_feature 1851..2126
/locus_tag="QK781_s2gp1"
/note="Nepovirus coat protein, N-terminal domain; Region:
Nepo_coat_N; pfam03689"
/db_xref="CDD:397651"
misc_feature 2352..2849
/locus_tag="QK781_s2gp1"
/note="Nepovirus coat protein, central domain; Region:
Nepo_coat; pfam03391"
/db_xref="CDD:397456"
misc_feature 2865..3350
/locus_tag="QK781_s2gp1"
/note="Nepovirus coat protein, C-terminal domain; Region:
Nepo_coat_C; pfam03688"
/db_xref="CDD:397650"
ORIGIN
1 acacggttcg ggttacgttt ctctcctctc cttttgttcc ttaattgtct ttaacaattg
61 cgatcttgag aatcccctcc ctattttcct ggtggcccca ttttcttact gctccaatgg
121 agctcctctg ccggcaagct gatgccaccc tcccccgcaa tgtccaacac attggcaccc
181 ctctctcacg ggttgcctcc gctatggctt tctttaagaa agccgcccgc cagttctcca
241 agcaggccga cgcctgcgat cttgctgcgc tcgccatgga gcgcgtggct gagcataacg
301 gtatcaccgt tacagccgca aatatccaac aactctttga gtttgttgga caacatgttg
361 ctgaccctga tgagcgcaag gctctcaggg gtgctttgcg cgaacagcgc aaagcattcc
421 gtgcttcctt gccgggtgca tgtttcccca tgccccgtcc cattccttct ccccccccac
481 tgcccacatt tgtggtggtg aagagaccac gcttccgcgt ggttgctcca ccgccattta
541 ttccacgggc cccgccacta ccccacttca aaaaggtcgt tcgacccaat tttgtggtgg
601 tggctccgcc tccccctcct gaggtgtacc agtctcctgg tgcacctttt cctttgggcc
661 gttctgacca ggccctccgc ttcttcaagc tggctgccac ttgtcgtcag actttggtat
721 gtgctgttgc agagcagcca gctctgatgc actgttgtgc ctctactggt gaggtgcaag
781 aaatgactgc catgcttact gaagctaggc agtctgggaa gattttgacc cccaaggagg
841 tcacctcagc ccttgcactt aaacgcaagg aaattaaagg ggctgaggaa aatcgcatct
901 cctttgatga gggggtgcat ttgtctgagt cggatgtgtt ccaccggctc agtctcacta
961 agcgctattt agcgccaaag cgcgatcgta ccttggtgga cgttttaatg cccactgagc
1021 acgaaactgt gcgctatcct ggcacaaggc cagatggaac acttcagatg tgcgtgtctg
1081 cccttcctcg catgtctgaa gaagcagctc gaaagctgct tgagaagggg tggaagaact
1141 ccaaaaatgt gtctcttgac ataggggtta cttcctatat gccatatggt gctcccatag
1201 ttgctttcat gacaatcatg gatgggcgca ccactgatcc gcaagaggct gcactgtgtg
1261 ccaactacat ggatcttgga cgtgaaaagt ctaaggtctt atctttgcct cttgttacca
1321 ttcctctctc tgagattgaa catgacacta caatattgga ttgtctctat atagtgacat
1381 attttcatgg tgttcaatct taccaacccg gtacattaat gctgagttat ggaacactcg
1441 aatttcaaga gtattccaat aattctttca caacggcaac ccgggtcagg gagagttggg
1501 accagatatt gcagcgcaat tctaacttag gaaagcgcgt gcatgctgga attggtgtat
1561 tgggcaccat tgaaaaagaa atggatcagg ctctgcctga ttttccccaa attgatcttc
1621 aagtgcggcc ccaacctgtg gtacgcacgt ttcaagagac tgcccgtcct caattggcct
1681 gccgttctat gcgaataggc accacttctt ttacgggcaa tacagggcgc aagtctcttg
1741 atgttgttca caagtggcag gatgtgccct ctggaagttc cagcatacca ccattaccac
1801 ggcatagtga tcacagtttc actgcgccca ctgtggttgt tgacccgtcg tgctgtgggc
1861 acctttcttt caaagtgccc aaggatgcaa agaagggtac ccatcttggt actcttgata
1921 tggcagcggc gataaatgcc tatggtgggg cacatgccca gaattggtgg gcaaagggtg
1981 ttcttaatcc gtgctttacg gtgcggcttc atgctccaaa gaacgccttt gctgggctat
2041 ctatagcgtg tacatttgat aattataaac gcatagatct tgccactctt ggaaactcct
2101 gtcctgttca ggagatgttt gagttcccca cgaaagtttt cgtgcttaaa gatgcggatg
2161 ttcatgaatg gacatttaca tatggggatc ttactgggca tggcctagtg cagtggacaa
2221 atacagtcac gcagcccaaa ttatttttct atgtggcttc gaccaatcaa gtcacgatgg
2281 ctgctgactg gaattgtgta accaccttgc acatggttga tggtgatgat gagcctcgct
2341 ttgaattaga acccaccatc acctggccca ttacatgccg gaatagcttc aacattgaca
2401 gatactatga agctaaagag attaagcttg atggcaccac cacctttctt tcaatagaat
2461 ataattttgg tggtcctatc aaggcttctg tcaagagttc catctccttc tcccgagcag
2521 tcatggccca atgtctcggt tggagtggca ctatttcagg gagtgttaag agcgtttcaa
2581 gtctgttttg ttccgcttcg tacattctct ttccttgggc ctgggatgcc cccccctctt
2641 tgcatgatgt actctggggg ccacatcaaa ttatgcatgg tgatggcgat tttgaaatag
2701 ctattaaaac tagctataag tccacaccta ccatgatggc aggagtaggc cgtttgggga
2761 ttcttcccct ttcgggtccc gtagcacctg atgctcacgt tggtgcatat gaattttttg
2821 tgcacatacg ggaatgggtt ccggatgaac agatccaccc acctatcttc tccactcagg
2881 atgtgtataa ctggataacc atttccacag tcacccctga tgctgtttct ggcgtctggg
2941 agactacaat tccaggttat atacacgatt atgctgacaa gaatgcagtt gtcagtttgt
3001 cctctaatcc cctctcgtgg cttgttgctg ccacaggctg gcattttggg gaagttgatc
3061 tctgtttctc atgggcccgc acgggcaagg ctgcagatca ggagagtatt gtctctatag
3121 ctgtctgtta ttctgattat gacaagcgta tacggggcaa tacgcgtaca tttgatgtgc
3181 gcaacactag ttatgaggtg ccatattttc ttggttctta tgctggtgcc actccttctg
3241 gccctcttgg agatcagaac tatatacgca tctctgttat aaatgccaaa actcttatgg
3301 cgatgcgtat aggtattagg cctcgaagtt tatctttttg gggccgtact gcaacacttt
3361 tctgattggc ttttgttagt cgatctcttc ttttgttttg agtcaagtaa ccaggagcag
3421 cccttctgac tttaattagt tggaaacatt gttgtacgcg ttggttactt taggtaaata
3481 cgggctttaa ctagttcgtt ttagttttcc cgaccctact gggttggtcc tgtccttagg
3541 tggatgggga agctgtataa actctgagtt caagggtgtg agagcctttg ttccagtctg
3601 tcagctgctg tgttaaatga gctttctacc gggctagctc aaccggtgca cagtgaacac
3661 tactgaagtg gcgagtgagt agccaaactt ccggggtaaa tccctagtta acaaaatgtg
3721 ttaggacgtt gtttctgaca gctttgttgg tcctattgag ttttctaaag ctgttttgtg
3781 tttgtgtttg tttgattttc ttttcgtttg cttgttttat ttacttgctt tc
//
