GenomeNet

Database: RefSeq
Entry: NP_490592
LinkDB: NP_490592
Original site: NP_490592 
LOCUS       NP_490592               1752 aa            linear   CON 12-DEC-2016
DEFINITION  conjugative transfer: oriT nicking-unwinding (plasmid) [Salmonella
            enterica subsp. enterica serovar Typhimurium str. LT2].
ACCESSION   NP_490592
VERSION     NP_490592.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
            Assembly: GCF_000006945.2
DBSOURCE    REFSEQ: accession NC_003277.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 1752)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 1752)
  CONSRTM   Washington University Genome Sequencing Center.
  TITLE     The Salmonella typhimurium Genome Sequencing Project
  JOURNAL   Unpublished
REFERENCE   3  (residues 1 to 1752)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2016) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (residues 1 to 1752)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   5  (residues 1 to 1752)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
  REMARK    This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate chemistry
            or covered by high quality data (i.e., phred quality >= 30); an
            attempt was made to resolve all sequencing problems, such as
            compressions and repeats; all regions were covered by sequence from
            more than one m13 subclone.
            NOTES: Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER (Salzberg, S., Delcher, A., Kasif, A. and White, O. (1998)
            NAR 26,544-548)  GeneMark (Lukashim, A.V. and Borodovsky, M.
            (1998), NAR 26, 1107-1115.
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to AAL23509.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /plasmid="pSLT"
     Protein         1..1752
                     /product="conjugative transfer: oriT nicking-unwinding"
                     /calculated_mol_wt=191553
     Region          2..1747
                     /region_name="PRK13709"
                     /note="conjugal transfer nickase/helicase TraI;
                     Provisional"
                     /db_xref="CDD:237478"
     CDS             1..1752
                     /gene="traI"
                     /locus_tag="PSLT108"
                     /coded_by="NC_003277.2:87276..92534"
                     /transl_table=11
                     /db_xref="GeneID:1256130"
CONTIG      join(WP_000986921.1:1..1752)
ORIGIN      
        1 mmsiaqvrsa gsaagyysdr dnyyvlgsme erwagkgaeq lglqgtvdke vftrvlegrl
       61 pdgadlsrqq dggnkhrpgy dltfsapksv slmamlagdk rlteahnqav diavrqveal
      121 astrvmtdgq setvltgnlv malfnhdtsr dqepqlhtha vvvnvtqhdg ewktlssdkv
      181 gktgfienvy anqiafgkiy ravlkekvea lgyetevvgk hgmwempgvp veafssrsqa
      241 ireavgedas lksrdvaald trkskqhvdp evkmaewmqt lkdtgfdisa yresadrrae
      301 iqaaqpvpsq eqpdiqqavt qaiaglsdrk vqftytdvla rtvgmlppea gviekaragi
      361 deaisreqli pldrekglft sgihvldels vralssdimk qnrvtvhpek svprtgsysd
      421 avsvlaqdrp slaiisgqgg aagqrervae ltmmareqgr evqiivadrr sqtnlkqder
      481 lsgelitgrr qlqegmlfsp gstvivdqge klslketltl ldgaarhnvq vlitdsgqrt
      541 gtgsalmamk eagvnsyrwq grqqtpatvi sepdrnvrya rlagdfvaav kageesvaqv
      601 sgmreqaila gmirselktq gilgqqdtmm talspvwlds rnrylrdmyr egmvmeqwnp
      661 ekrshdryvi drvtaqshsl tlrdaqgetq mvrisaldss wslfrpekmp vadgerlmvt
      721 gkipglrvsv gdrlqvsavn dgvmtvtvpg raepaslpvg dspftalkle ngwvetpghs
      781 vsdsakvfas vtqmamdnat lnslarsgrd vrlyssldet rtaeklsrhp sftvvseqik
      841 aragevslet aisrqkaglh tpaqqaihla lpvvesknla fsqvdlltea ksfaaegtgf
      901 adlgreidaq ikrgdllyvd vakgygtdll israsydaek silhhilegk eavtplmerv
      961 pgelmetlts gqraatrmil etkdrftvvq gyagvgkttq fravmsavnl lpeserprvv
     1021 glgpthravg emrsagveaq tlasflhdtq lqqrsgetpd fsntlfllde ssmvgntdma
     1081 rayaliaagg gravasgdtd qlqaiapgqp frlqqtrsaa dvaimkeivr qtpelrdavy
     1141 slinrdvnka lsglenvkpv qvprlkgawa pensvtefsr lqerelakaa qeaekkgeaf
     1201 pdvpvtlyea ivrdytgrtp eareqtlivt hlnedrrvln smiqdalakp geqqvtvpvl
     1261 ttanirdgel rrlstweahp galalvdnvy hriagisked glitledkag ntrlisprea
     1321 aaegvtlynp etirvgagdr mrftksdrer gyvansvwtv tavsgdsvtl sdgkqtrvvr
     1381 pgqdraeqhi dlayaitahs aqgasetfai alegteggrk qmagfesayv alsrmkqhvq
     1441 vytddrqgwv kainsaeqkg tahdvlepks eremmnaerl fstarelrdv aagravlrna
     1501 glaqgdsrar fiapgrkypq pyvalpafdr ngksagiwln plttddgagl rgftgegrvk
     1561 gseeaqfval qgsrngesll agsmqdgvri arenpdsgvv vrivgdgrpw npvaitggrv
     1621 wgdipdsnvq pgagngepvt aeilaqrqae eavrreterr adeivrkmae dksdlpeekt
     1681 aqavreiagq eqdrmtpper epplpesvlr epqreretir evarenrgre rlqqmeqemv
     1741 rdlqkektpg gd
//
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