GenomeNet

Database: RefSeq
Entry: NP_717814
LinkDB: NP_717814
Original site: NP_717814 
LOCUS       NP_717814                336 aa            linear   CON 03-AUG-2016
DEFINITION  D-alanine--D-alanine ligase DdlA [Shewanella oneidensis MR-1].
ACCESSION   NP_717814
VERSION     NP_717814.1
DBLINK      BioProject: PRJNA57949
            Assembly: GCF_000146165.2
DBSOURCE    REFSEQ: accession NC_004347.2
KEYWORDS    RefSeq.
SOURCE      Shewanella oneidensis MR-1
  ORGANISM  Shewanella oneidensis MR-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
            Shewanellaceae; Shewanella.
REFERENCE   1  (residues 1 to 336)
  AUTHORS   Romine,M.F.
  TITLE     Genome-wide protein localization prediction strategies for gram
            negative bacteria
  JOURNAL   BMC Genomics 12 (SUPPL 1), S1 (2011)
   PUBMED   21810203
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 336)
  AUTHORS   Romine,M.F., Carlson,T.S., Norbeck,A.D., McCue,L.A. and Lipton,M.S.
  TITLE     Identification of mobile elements and pseudogenes in the Shewanella
            oneidensis MR-1 genome
  JOURNAL   Appl. Environ. Microbiol. 74 (10), 3257-3265 (2008)
   PUBMED   18378659
REFERENCE   3  (residues 1 to 336)
  AUTHORS   Elias,D.A., Monroe,M.E., Marshall,M.J., Romine,M.F., Belieav,A.S.,
            Fredrickson,J.K., Anderson,G.A., Smith,R.D. and Lipton,M.S.
  TITLE     Global detection and characterization of hypothetical proteins in
            Shewanella oneidensis MR-1 using LC-MS based proteomics
  JOURNAL   Proteomics 5 (12), 3120-3130 (2005)
   PUBMED   16038018
REFERENCE   4  (residues 1 to 336)
  AUTHORS   Heidelberg,J.F., Paulsen,I.T., Nelson,K.E., Gaidos,E.J.,
            Nelson,W.C., Read,T.D., Eisen,J.A., Seshadri,R., Ward,N., Methe,B.,
            Clayton,R.A., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L.,
            Daugherty,S., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Haft,D.H.,
            Kolonay,J.F., Madupu,R., Peterson,J.D., Umayam,L.A., White,O.,
            Wolf,A.M., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K.,
            Lee,C., Mueller,J., Khouri,H., Gill,J., Utterback,T.R.,
            McDonald,L.A., Feldblyum,T.V., Smith,H.O., Venter,J.C.,
            Nealson,K.H. and Fraser,C.M.
  TITLE     Genome sequence of the dissimilatory metal ion-reducing bacterium
            Shewanella oneidensis
  JOURNAL   Nat. Biotechnol. 20 (11), 1118-1123 (2002)
   PUBMED   12368813
REFERENCE   5  (residues 1 to 336)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   6  (residues 1 to 336)
  AUTHORS   Romine,M.F., Carlson,T.S., Norbeck,A.D., McCue,L.A., Lipton,M.S.,
            Elias,D.A., Monroe,M.E., Marshall,M.J., Belieav,A.S.,
            Fredrickson,J.K., Anderson,G.A., Smith,R.D. and Nelson,W.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2012) Biological Sciences Division, Department of
            Microbiology, Pascific Northwest National Laboratory, 902 Battelle,
            Blvd, Richland, WA 99352, USA
  REMARK    Sequence update by submitter
REFERENCE   7  (residues 1 to 336)
  AUTHORS   Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W.,
            Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R.,
            Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
            DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R.,
            Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J.,
            Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,
            Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T.,
            Smith,H., Venter,J., Nealson,K. and Fraser,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2002) The Institute for Genomic Research, 9712
            Medical Center Dr., Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence is identical to AAN55258.
            RefSeq Category: Reference Genome
                        TYS: Designated Type Strain
                        UPR: UniProt Genome
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Shewanella oneidensis MR-1"
                     /strain="MR-1"
                     /db_xref="taxon:211586"
     Protein         1..336
                     /product="D-alanine--D-alanine ligase DdlA"
                     /EC_number="6.3.2.4"
                     /calculated_mol_wt=37337
     Region          1..334
                     /region_name="ddl"
                     /note="D-alanyl-alanine synthetase A; Reviewed; PRK01966"
                     /db_xref="CDD:234993"
     Region          5..109
                     /region_name="Dala_Dala_lig_N"
                     /note="D-ala D-ala ligase N-terminus; pfam01820"
                     /db_xref="CDD:280066"
     Region          127..329
                     /region_name="ATP-grasp_4"
                     /note="ATP-grasp domain; cl17255"
                     /db_xref="CDD:302634"
     CDS             1..336
                     /gene="ddlA"
                     /locus_tag="SO_2217"
                     /coded_by="complement(NC_004347.2:2331691..2332701)"
                     /transl_table=11
                     /db_xref="GeneID:1169954"
CONTIG      join(WP_011072241.1:1..336)
ORIGIN      
        1 mskinllllc gggsaehdis llsanyfets lakseqfnvl rvvldkfgqy qtaagddcel
       61 tnnreirfrd eskapwpvdy vipcihgypg etgdiqsyfn liqlpyfgce seassncfnk
      121 itakmwfsal gipntpyifl nqyddeaiaq tqaalekwgs ifvkaasqgs svgcykvdea
      181 skvlgvlkda fgyapyvive ktikarelev avyeyqgevi atlpgeiicd sntfytfdek
      241 yaksskartd vvaqnvptdi sdqirayaik afkgmklrhl sridffltad neillneint
      301 fpgstpismf pkmlqnhghd ftqylslvin sqlaak
//
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