LOCUS NP_974455 612 aa linear PLN 20-OCT-2022
DEFINITION DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana].
ACCESSION NP_974455
VERSION NP_974455.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_202726.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 612)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (residues 1 to 612)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 612)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 612)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE79792.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..612
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
Protein 1..612
/product="DEA(D/H)-box RNA helicase family protein"
/calculated_mol_wt=65895
Region 152..372
/region_name="DEADc_DDX3_DDX4"
/note="DEAD-box helicase domain of ATP-dependent RNA
helicases DDX3 and DDX4; cd17967"
/db_xref="CDD:350725"
Site order(153,171,173..175,178,196..202,310..311,346)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350725"
Site order(237..239,265..266,286..289,292,314,320)
/site_type="other"
/note="RNA binding site [nucleotide binding]"
/db_xref="CDD:350725"
Region 378..512
/region_name="SF2_C_DEAD"
/note="C-terminal helicase domain of the DEAD box
helicases; cd18787"
/db_xref="CDD:350174"
Site order(471,473,498,501..502)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350174"
CDS 1..612
/locus_tag="AT3G58510"
/coded_by="NM_202726.2:340..2178"
/inference="Similar to RNA sequence,
EST:INSD:AV440313.1,INSD:ES077109.1,INSD:AV534889.1,
INSD:EH955234.1,INSD:ES054009.1,INSD:EG459803.1,
INSD:BP592357.1,INSD:AV546760.1,INSD:ES149046.1,
INSD:ES213776.1,INSD:CD531740.1,INSD:DR379583.1,
INSD:ES202333.1,INSD:DR379466.1,INSD:CB255851.1,
INSD:CK119070.1,INSD:BP561472.2,INSD:BP652144.1,
INSD:ES115367.1,INSD:EL107195.1,INSD:ES191313.1,
INSD:EL984599.1,INSD:BP612587.1,INSD:ES152655.1,
INSD:AV547822.1,INSD:AV792305.1,INSD:EH797769.1,
INSD:ES120405.1,INSD:T75876.1,INSD:DR376800.1,
INSD:ES031146.1,INSD:AV546769.1,INSD:T44044.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY114637.1,INSD:AJ010463.1,INSD:AY062446.1,
INSD:BX823918.1"
/note="DEA(D/H)-box RNA helicase family protein; FUNCTIONS
IN: helicase activity, ATP-dependent helicase activity,
ATP binding, nucleic acid binding; LOCATED IN: nucleolus,
peroxisome, plasma membrane; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif
(InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box
type, N-terminal (InterPro:IPR011545), DEAD-like helicase,
N-terminal (InterPro:IPR014001), DNA/RNA helicase,
C-terminal (InterPro:IPR001650), Helicase, superfamily
1/2, ATP-binding domain (InterPro:IPR014021); BEST
Arabidopsis thaliana protein match is: P-loop containing
nucleoside triphosphate hydrolases superfamily protein
(TAIR:AT2G42520.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="GeneID:825020"
/db_xref="TAIR:AT3G58510"
/db_xref="Araport:AT3G58510"
ORIGIN
1 msaswadvad sekavsqskp pyvpphlrnr psepvaaplp qndhagyggq pagsrwapps
61 sggggasggg yrndggrtgy gygagggggg gggwnnrsgg wdrrerevnp fgddaelepv
121 fteqentgin fdayedipve tsggdvpppv ntfadidlgd alnlnirrck yvrptpvqrh
181 aipillaerd lmacaqtgsg ktaafcfpii sgimkdqhve rprgsravyp favilsptre
241 lacqihdeak kfsyqtgvkv vvayggtpih qqlrelergc dilvatpgrl ndllerarvs
301 mqmirflald eadrmldmgf epqirkiveq mdmpprgvrq tmlfsatfps qiqrlaadfm
361 snyiflavgr vgsstdlitq rvefvqesdk rshlmdllha qretqdkqsl tlvfvetkrg
421 adtlenwlcm nefpatsihg drtqqereva lrsfktgrtp ilvatdvaar gldiphvahv
481 vnfdlpndid dyvhrigrtg ragksgiata ffnennaqla rslaelmqea nqevpewltr
541 yasrasfggg kkrsggrfgg rdfrregsys rggggggggg gsdyyggggy ggggyggaps
601 ggygagvtsa wd
//
