GenomeNet

Database: RefSeq
Entry: XP_002177253
LinkDB: XP_002177253
Original site: XP_002177253 
LOCUS       XP_002177253             226 aa            linear   PLN 16-JUN-2017
DEFINITION  mutase superoxide dismutase [Phaeodactylum tricornutum CCAP
            1055/1].
ACCESSION   XP_002177253
VERSION     XP_002177253.1
DBLINK      BioProject: PRJNA33251
            BioSample: SAMN02953727
DBSOURCE    REFSEQ: accession XM_002177217.1
KEYWORDS    RefSeq.
SOURCE      Phaeodactylum tricornutum CCAP 1055/1
  ORGANISM  Phaeodactylum tricornutum CCAP 1055/1
            Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae;
            Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum.
REFERENCE   1  (residues 1 to 226)
  AUTHORS   Bowler,C., Allen,A.E., Badger,J.H., Grimwood,J., Jabbari,K.,
            Kuo,A., Maheswari,U., Martens,C., Maumus,F., Otillar,R.P.,
            Rayko,E., Salamov,A., Vandepoele,K., Beszteri,B., Gruber,A.,
            Heijde,M., Katinka,M., Mock,T., Valentin,K., Verret,F.,
            Berges,J.A., Brownlee,C., Cadoret,J.P., Chiovitti,A., Choi,C.J.,
            Coesel,S., De Martino,A., Detter,J.C., Durkin,C., Falciatore,A.,
            Fournet,J., Haruta,M., Huysman,M.J., Jenkins,B.D., Jiroutova,K.,
            Jorgensen,R.E., Joubert,Y., Kaplan,A., Kroger,N., Kroth,P.G., La
            Roche,J., Lindquist,E., Lommer,M., Martin-Jezequel,V., Lopez,P.J.,
            Lucas,S., Mangogna,M., McGinnis,K., Medlin,L.K., Montsant,A.,
            Oudot-Le Secq,M.P., Napoli,C., Obornik,M., Parker,M.S., Petit,J.L.,
            Porcel,B.M., Poulsen,N., Robison,M., Rychlewski,L., Rynearson,T.A.,
            Schmutz,J., Shapiro,H., Siaut,M., Stanley,M., Sussman,M.R.,
            Taylor,A.R., Vardi,A., von Dassow,P., Vyverman,W., Willis,A.,
            Wyrwicz,L.S., Rokhsar,D.S., Weissenbach,J., Armbrust,E.V.,
            Green,B.R., Van de Peer,Y. and Grigoriev,I.V.
  TITLE     The Phaeodactylum genome reveals the evolutionary history of diatom
            genomes
  JOURNAL   Nature 456 (7219), 239-244 (2008)
   PUBMED   18923393
REFERENCE   2  (residues 1 to 226)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 226)
  AUTHORS   Grigoriev,I., Grimwood,J., Kuo,A., Otillar,R.P., Salamov,A.,
            Detter,J.C., Lindquist,E., Shapiro,H., Lucas,S., Glavina del
            Rio,T., Pitluck,S., Rokhsar,D. and Bowler,C.
  CONSRTM   Diatom Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to EEC51716.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Phaeodactylum tricornutum CCAP 1055/1"
                     /strain="CCAP 1055/1"
                     /db_xref="taxon:556484"
                     /chromosome="1"
                     /country="United Kingdom: Blackpool"
     Protein         1..226
                     /product="mutase superoxide dismutase"
                     /calculated_mol_wt=24647
     Region          42..226
                     /region_name="SodA"
                     /note="Superoxide dismutase [Inorganic ion transport and
                     metabolism]; COG0605"
                     /db_xref="CDD:223678"
     Region          43..120
                     /region_name="Sod_Fe_N"
                     /note="Iron/manganese superoxide dismutases, alpha-hairpin
                     domain; pfam00081"
                     /db_xref="CDD:278509"
     Region          121..221
                     /region_name="Sod_Fe_C"
                     /note="Iron/manganese superoxide dismutases, C-terminal
                     domain; pfam02777"
                     /db_xref="CDD:280872"
     CDS             1..226
                     /gene="SOD2"
                     /locus_tag="PHATRDRAFT_42832"
                     /coded_by="XM_002177217.1:106..786"
                     /note="Superoxide dismutase [Fe/Mn], likely a
                     mitochondrial precursor; catalyses the conversion of
                     superoxide radicals to molecular oxygen"
                     /db_xref="GeneID:7196432"
                     /db_xref="InterPro:IPR001189"
ORIGIN      
        1 msgskiivds alraavnlrs skiptelaks saalfsaygg akkhelptlt ydyaslepai
       61 saetmelhhs khhntyvtnl nvtlekmdsa ltssdisali glqgalkfng gghlnhtlfw
      121 dlesaikesf gdfeklktem saktvavqgs gwgwlgynks tgrleiatca nqdpleattg
      181 lapllgidvw ehayyvdyrn vrpdyvkniw diinwdtvaq rlsatk
//
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