GenomeNet

Database: RefSeq
Entry: XP_002602881
LinkDB: XP_002602881
Original site: XP_002602881 
LOCUS       XP_002602881             605 aa            linear   INV 08-OCT-2009
DEFINITION  hypothetical protein BRAFLDRAFT_286271 [Branchiostoma floridae].
ACCESSION   XP_002602881
VERSION     XP_002602881.1
DBSOURCE    REFSEQ: accession XM_002602835.1
KEYWORDS    RefSeq.
SOURCE      Branchiostoma floridae (Florida lancelet)
  ORGANISM  Branchiostoma floridae
            Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae;
            Branchiostoma.
REFERENCE   1  (residues 1 to 605)
  AUTHORS   Putnam,N.H., Butts,T., Ferrier,D.E., Furlong,R.F., Hellsten,U.,
            Kawashima,T., Robinson-Rechavi,M., Shoguchi,E., Terry,A., Yu,J.K.,
            Benito-Gutierrez,E.L., Dubchak,I., Garcia-Fernandez,J.,
            Gibson-Brown,J.J., Grigoriev,I.V., Horton,A.C., de Jong,P.J.,
            Jurka,J., Kapitonov,V.V., Kohara,Y., Kuroki,Y., Lindquist,E.,
            Lucas,S., Osoegawa,K., Pennacchio,L.A., Salamov,A.A., Satou,Y.,
            Sauka-Spengler,T., Schmutz,J., Shin-I,T., Toyoda,A.,
            Bronner-Fraser,M., Fujiyama,A., Holland,L.Z., Holland,P.W.,
            Satoh,N. and Rokhsar,D.S.
  TITLE     The amphioxus genome and the evolution of the chordate karyotype
  JOURNAL   Nature 453 (7198), 1064-1071 (2008)
   PUBMED   18563158
REFERENCE   2  (residues 1 to 605)
  AUTHORS   Terry,A., Salamov,A., Zhou,K., Grigoriev,I., Pitluck,S., Lucas,S.,
            Detter,J.C., Glavina del Rio,T., Shapiro,H., Lindquist,E.,
            Putnam,N. and Rokhsar,D.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2008) US DOE Joint Genome Institute, 2800
            Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to EEN58893.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Branchiostoma floridae"
                     /strain="S238N-H82"
                     /db_xref="taxon:7739"
                     /sex="male"
                     /tissue_type="testes"
                     /country="USA: Old Tampa Bay, Florida"
     Protein         1..605
                     /product="hypothetical protein"
                     /calculated_mol_wt=67504
     Region          <1..45
                     /region_name="Transglut_N"
                     /note="Transglutaminase family; pfam00868"
                     /db_xref="CDD:279240"
     Region          189..279
                     /region_name="TGc"
                     /note="Transglutaminase/protease-like homologues;
                     smart00460"
                     /db_xref="CDD:214673"
     Region          <193..287
                     /region_name="YebA"
                     /note="Transglutaminase-like enzyme, putative cysteine
                     protease [Posttranslational modification, protein
                     turnover, chaperones]; COG1305"
                     /db_xref="CDD:224224"
     Region          396..501
                     /region_name="Transglut_C"
                     /note="Transglutaminase family, C-terminal ig like domain;
                     pfam00927"
                     /db_xref="CDD:279295"
     Region          509..604
                     /region_name="Transglut_C"
                     /note="Transglutaminase family, C-terminal ig like domain;
                     pfam00927"
                     /db_xref="CDD:279295"
     CDS             1..605
                     /locus_tag="BRAFLDRAFT_286271"
                     /coded_by="XM_002602835.1:175..1992"
                     /db_xref="InterPro:IPR001102"
                     /db_xref="InterPro:IPR002931"
                     /db_xref="GeneID:7210718"
ORIGIN      
        1 mpvgksledg kfsaalesse ggyakvkitt ppdaivgkyh vvietmsdgk tfrsrktddn
       61 tvvvlfnpwv kedmtylddd aqlgeyvlne hgyqyygtsl rigkrpwnfg qfepkildvc
      121 lrlldrskik aesrgdavkv srivskmvns addggvltgn wsgnyaggrs ptawngsvei
      181 lrqyyernrp vcygqcwvfs gvmttvlrcl giparsvtny dsahdtdvsm tidnymdhnl
      241 reidggdsvw nfhvwneawm arpdlpegyg gwqavdatpq etsdgvyccg pcpisavkng
      301 hvylpydtkf vfaevnadkv ywlvrqhknl rklrtrkaai gnkmstkavg snarhdlten
      361 ykypegsdqe rvavrtavsh glkpntyddv iededvefdv haddeiyigq nihvtlsmkn
      421 tsseprkvtt hltaramyyt gvpahdigem ekdvtippng eesvemtytp reyldmlvdq
      481 aivkihamah vddtnqvysg qddfrlmspd ltvtaptkmt lgeqvtaeie ftnpldvtls
      541 mvefhiegpg lqkpkkisht pikpgetvkv termtprkvg kktimasfts nkltqvtgev
      601 dvvvs
//
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