LOCUS XP_006003324 1836 aa linear VRT 26-OCT-2015
DEFINITION PREDICTED: sodium channel protein type 4 subunit alpha-like isoform
X1 [Latimeria chalumnae].
ACCESSION XP_006003324
VERSION XP_006003324.1
DBLINK BioProject: PRJNA219830
DBSOURCE REFSEQ: accession XM_006003262.2
KEYWORDS RefSeq.
SOURCE Latimeria chalumnae (coelacanth)
ORGANISM Latimeria chalumnae
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Coelacanthiformes; Coelacanthidae; Latimeria.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_005819918.1) annotated using gene prediction method: Gnomon,
supported by mRNA evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Latimeria chalumnae Annotation
Release 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 6.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1836
/organism="Latimeria chalumnae"
/isolate="SAIAB 97564"
/db_xref="taxon:7897"
/chromosome="Unknown"
/tissue_type="blood"
/country="South Africa"
/note="Wild Caught"
Protein 1..1836
/product="sodium channel protein type 4 subunit alpha-like
isoform X1"
/calculated_mol_wt=209061
Region 127..438
/region_name="Ion_trans"
/note="Ion transport protein; pfam00520"
/db_xref="CDD:425730"
Region 613..826
/region_name="Ion_trans"
/note="Ion transport protein; pfam00520"
/db_xref="CDD:425730"
Region 852..1043
/region_name="Na_trans_assoc"
/note="Sodium ion transport-associated; pfam06512"
/db_xref="CDD:428983"
Region 1047..1321
/region_name="Ion_trans"
/note="Ion transport protein; pfam00520"
/db_xref="CDD:425730"
Region 1313..1365
/region_name="Na_channel_gate"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; cd13433"
/db_xref="CDD:240441"
Site 1327..1330
/site_type="other"
/note="putative hydrophobic latch"
/db_xref="CDD:240441"
Region 1370..1625
/region_name="Ion_trans"
/note="Ion transport protein; pfam00520"
/db_xref="CDD:425730"
CDS 1..1836
/gene="LOC102366443"
/coded_by="XM_006003262.2:157..5667"
/db_xref="GeneID:102366443"
ORIGIN
1 maglrvtpgp dmlrrftres laeiekrfak kqadkakkkh velnedlapk pssdlevgks
61 lpfiygdlpp eligvpleel dpfysgertf ivinrgktin rfsttpalyl lspfssvrrg
121 aikvlihslf sffimitilt ncvfmtmsap ppwaknveyt ftgiytfesm ikilargfci
181 dsftflrdpw nwldfsvivm ayvtefvdlg nvsalrtfrv lralktitvi pglktivgal
241 iqsvkklsdv miltvfclsv faliglqlfm gnlrqkcviw pppfndtwtd fdlgmgndtf
301 hnttiydsaa aysnttfdwd aylnneenfy fldgqldall cgnssdagrc pegflcmkag
361 rnpnygytsf dtfswaflsl frlmtqdywe nlfqltlraa gktymiffvv iiflgsfyli
421 nlilavvama yaeqneatle eakqqeeefq rqleqlkkqq eeqaaklhgs sgqhlsskds
481 lasskgqkrd mdtksddeqs ggegrkmand wngrpvpsvv idrvstgees etidreqekt
541 asnhpsidhl eeptlqkrta sivsvvsntm eeleeahqkc ppwwykfayk fliwdccilw
601 vkfkeivkfi vmdpfvdlgi ticiilntmf mamehypmtp qfenvlsign lvftgiftae
661 mvfkiialdp yyyfqigwni fdsiivtlsl velglanvqg lsvlrsfrll rvfklakswp
721 tlnmlikiig nsvgalgnlt lvlaiivfif avvgmqlfgk nykdcvckis sdcvlprwhm
781 tdffhafliv frilcgewie tmwdcmevag qplcfivfmm vmvignlvvl nlflalllss
841 fsadnlsasd ddnemnnlqi ainritrgvd fikslpvrll qgirrtdned ddqkkedyvl
901 nhmdpvpesk sdfkpvdgva skephladev dqmsfmdnps iavrvpiaaa esdleiadee
961 mtsesetedv kkkesdigss rcstadyqap evveevvaee epenedpepc ftegcirrcp
1021 cltvditqgs gklwwtlrkt cfkivehnwf etfiifmill ssgalafedv yierrrvvki
1081 ileyadkvft yvfvvemllk wtaygfktyf tnawcwldfl ivdvslislt anwmgyselg
1141 pikslrtlra lrplralsrf egmrvvvnal lgaipsimnv llvclifwli fsimgvnlfa
1201 gkfyrcvntt tgelfdvsmv nnksdcfsly dtgevrwmnv kvnfdnvgfg ylsllqvatf
1261 kgwmeimyaa vdsreveeqp syeinlymyl yfvifiifga fftlnlfigv iidnfnqqkk
1321 kfggkdifmt eeqkkyynam kklgskkpqk piprpqnkiq gvvfdfvskq afdifimvli
1381 clnmvtmmie tddqsaekee ilywvnlvfi vvftgecilk iialrhyyft mgwnifdfvv
1441 vilsvvgiml adiiekyfvs ptlfrvirla rigrilrlik gakgirtllf almmslpalf
1501 niglllflvm fiysifgmsn fayvkreagi ddifnfetfg nsiiclfqit tsagwdglls
1561 pilnsgppdc dptienpgtd vkgdcgnpsv givffcsyii isflivvnmy iaiilenfnv
1621 ateesaeplc eddfemfyet wekfdpdatq fidycklsdf vdtlqdplki pkpnriklit
1681 mdlpmvagdk ihcldilfal tkevlgdsge mdalkqtmee kfmaanpskv syepitstlk
1741 rrheevsvti iqrayrrhlf mrsvkqasym yrqneecspd eeapekegli atkmkafygk
1801 gneteeempa saprtgtsps edkdwdekgn vresiv
//
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