LOCUS       XP_007501375             911 aa            linear   MAM 05-JUN-2023
DEFINITION  DNA ligase 4 [Monodelphis domestica].
ACCESSION   XP_007501375
VERSION     XP_007501375.2
DBLINK      BioProject: PRJNA967365
DBSOURCE    REFSEQ: accession XM_007501313.2
KEYWORDS    RefSeq.
SOURCE      Monodelphis domestica (gray short-tailed opossum)
  ORGANISM  Monodelphis domestica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_077234) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 5, 2023 this sequence version replaced XP_007501375.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_027887165.1-RS_2023_05
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 05/17/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Monodelphis domestica"
                     /isolate="mMonDom1"
                     /db_xref="taxon:13616"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="spleen, liver"
                     /dev_stage="adult"
                     /country="USA: Davis, California"
                     /lat_lon="38.544907 N 121.740517 W"
                     /collection_date="2020-11-01"
                     /collected_by="Leah Krubitzer, Rebecca Hodge"
     Protein         1..911
                     /product="DNA ligase 4"
                     /calculated_mol_wt=104367
     Region          81..602
                     /region_name="dnl1"
                     /note="DNA ligase I, ATP-dependent (dnl1); TIGR00574"
                     /db_xref="CDD:273147"
     Region          658..745
                     /region_name="BRCT_DNA_ligase_IV_rpt1"
                     /note="first BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17722"
                     /db_xref="CDD:349354"
     Region          750..783
                     /region_name="DNA_ligase_IV"
                     /note="DNA ligase IV; pfam11411"
                     /db_xref="CDD:431872"
     Region          813..900
                     /region_name="BRCT_DNA_ligase_IV_rpt2"
                     /note="second BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17717"
                     /db_xref="CDD:349349"
     Site            order(814,835..837,839..840,843..844,846..847,895,
                     898..899)
                     /site_type="other"
                     /note="XRCC4 interaction site [polypeptide binding]"
                     /db_xref="CDD:349349"
     CDS             1..911
                     /gene="LIG4"
                     /coded_by="XM_007501313.2:1666..4401"
                     /db_xref="GeneID:100018117"
ORIGIN      
        1 matsqpsrtv asqvpfadlc stleriqksk arpekikyfk efldswrrfh dalhkkekev
       61 tdsfypamrl ilpqlererm aygiketmla klyiellnlp kegkdaqkll nyrtptgtrg
      121 dagdfamiay fvlkprcpkq gsltiqqvnd ildliasnns anrkdlvkkn llqlitqssa
      181 leqkwlirmi ikdlklgfsq qtifslfhrd aaelhnvttd lekvcrqlhn plvglsdisi
      241 tlfsafkpml aavadiqrie kdmkhqgfyi etkldgermq mhkdgdvykf fsrngydyte
      301 qfgdsslngs lipfihkafk tniqncildg emmaynpntq tfmqkgskfd ikrmvedsdl
      361 qtcycvfdvl mvnnkklghe alrkryeiis tvftpikgrl evvqkteant kkevidalne
      421 aidkreegim iknplsiykp dkrgegwlki kpeyinelmd eldilivggy wgkglrggmm
      481 shflcavaet pppgekpsvf ytlcrvgsgy tmkelydlgl klskhwkpfh krappnsilc
      541 gtekpevyie pcnsvivqvk aaeivssdmy ktnctlrfpr iekiredkew ykcmtldele
      601 nlrgkasgkl askhlfiggd deepqgkkrk aikvkktigi iehlkapdls ninrisnvfe
      661 dvefcvmtgt dshskpdles hiaelggyiv qnpgpdtycv iagtenvrvk niissnkhdv
      721 vkpewllecf kakecvpwqp qfmihmcpst kehfaceydc ygdsyfadtd vvqlkevfsr
      781 iknvkeespn emasviadle dryswdncpl smfrhctmyv diyaiindlt tqiegtrlai
      841 kalelrfhga kvvscleegv shviigedhs rveefkafrr tlkrkykilq elwvtdslkk
      901 gelqeenqyl i
//