LOCUS XP_013872423 1040 aa linear VRT 17-SEP-2015
DEFINITION PREDICTED: contactin-1 isoform X2 [Austrofundulus limnaeus].
ACCESSION XP_013872423
VERSION XP_013872423.1
DBLINK BioProject: PRJNA294420
DBSOURCE REFSEQ: accession XM_014016969.1
KEYWORDS RefSeq.
SOURCE Austrofundulus limnaeus
ORGANISM Austrofundulus limnaeus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
Rivulidae; Austrofundulus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_013952560.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Austrofundulus limnaeus Annotation
Release 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 6.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1040
/organism="Austrofundulus limnaeus"
/strain="Quisiro"
/db_xref="taxon:52670"
/chromosome="Unknown"
/sex="male"
/tissue_type="liver; brain; white muscle"
/dev_stage="adult"
/collection_date="11-Mar-2014"
/collected_by="Josiah Wagner"
Protein 1..1040
/product="contactin-1 isoform X2"
/calculated_mol_wt=118330
Region 37..134
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:448366"
Region 58..62
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 71..75
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 96..100
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 111..116
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 125..128
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 142..230
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:448366"
Region 154..158
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 169..173
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 194..198
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 208..213
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 224..227
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 243..331
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:448366"
Region 261..265
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 274..278
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 296..300
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 310..315
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 323..326
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 335..411
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:448366"
Region 351..355
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 364..368
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 377..381
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 391..396
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 404..407
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 416..504
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:448366"
Region 435..439
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 448..452
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 470..474
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 484..489
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 497..500
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 506..601
/region_name="Ig"
/note="Immunoglobulin domain; cl11960"
/db_xref="CDD:448366"
Region 525..529
/region_name="Ig strand B"
/note="Ig strand B [structural motif]"
/db_xref="CDD:409353"
Region 540..544
/region_name="Ig strand C"
/note="Ig strand C [structural motif]"
/db_xref="CDD:409353"
Region 569..573
/region_name="Ig strand E"
/note="Ig strand E [structural motif]"
/db_xref="CDD:409353"
Region 583..588
/region_name="Ig strand F"
/note="Ig strand F [structural motif]"
/db_xref="CDD:409353"
Region 596..599
/region_name="Ig strand G"
/note="Ig strand G [structural motif]"
/db_xref="CDD:409353"
Region 613..707
/region_name="FN3"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; cd00063"
/db_xref="CDD:238020"
Site order(695..696,698..699)
/site_type="active"
/note="Cytokine receptor motif [active]"
/db_xref="CDD:238020"
Region 823..911
/region_name="fn3"
/note="Fibronectin type III domain; pfam00041"
/db_xref="CDD:394996"
Site order(908..909,911..912)
/site_type="active"
/note="Cytokine receptor motif [active]"
/db_xref="CDD:238020"
CDS 1..1040
/gene="cntn1"
/coded_by="XM_014016969.1:192..3314"
/db_xref="GeneID:106523528"
ORIGIN
1 mastallllc fsfsfsltva ilfgepxifg ddatgygpif eeepvdvvyt edspdkrisi
61 ncraranppa syrwrrdnwe iklkeqpdeh yslvggnlvi tnpihkkhag tytcvakniy
121 gtvlskearv kfgfieefpd eerepvyvke gqgavllcvp pkvwpqevty qwiynefpvf
181 lrtdrrrfvs qktgnlyiak veaqdagnys cfvsspvlgk svyskfipli plppddgeer
241 kypadirvkf pdttamlasn itlecfalgn piphivwrkv datdlpanhe isesgavlhl
301 ynvqyedvga ydceaintkg kdwhkawlyv eaapewaeti nntqvdigse htmrcvaagk
361 pfpfirwykd gymygkgelk fssltfddsg myqciaenvw gikyanaelr viacaptfel
421 npvkkqllga ndarvvieck praaprprft wtkgkellfn ssrisimfdg sleilnatrn
481 deglytcfae ndrgkanssg yltiteatsi tvapedsegk vgdevilrca asfdpmldit
541 fiwtidfrvi dfntewqhye rvmsedgvgd lriknvqiwh egrytctaqt vvdsdtayad
601 lkvvgvpgpp gvirveeigd twvkllwskg adhnspilyy tiqtrhfwal neddwrnast
661 sptvldatxe radvtdlypw meyqfriiat neygsgeasi pslkiktwda apvvsptdva
721 gyggrngeii itwtpvqpwy fygkkfgyiv afkphdaydw wyetisdpet rrhvhrdtyf
781 vpteedfqvr efqvkiksfn lkgdgpyslt kviyyprdvp tepptdvyar pvssteavvw
841 wlpvfdtgtg lqqyvegyqv kywrkyddpe pganrifvpa tanqtrlenm lpdshyliev
901 ralngaglgp pgelcemftk rpppadpprm wryiswtgkw lyvwwdhiqy dwfgdvsfpl
961 yykvmfrktg yiygkvyitg whfmdfpmpq lgdfelmvrg ryeggdgpvr kiriqgtasi
1021 ttptsslvlf mlltwcivgl
//
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