GenomeNet

Database: RefSeq
Entry: XP_014061575
LinkDB: XP_014061575
Original site: XP_014061575 
LOCUS       XP_014061575            4845 aa            linear   VRT 21-SEP-2015
DEFINITION  PREDICTED: ryanodine receptor 3-like isoform X4 [Salmo salar].
ACCESSION   XP_014061575
VERSION     XP_014061575.1
DBLINK      BioProject: PRJNA287919
DBSOURCE    REFSEQ: accession XM_014206100.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_012335338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Salmo salar Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4845
                     /organism="Salmo salar"
                     /isolate="Sally"
                     /db_xref="taxon:8030"
                     /chromosome="ssa06"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /breed="double haploid"
     Protein         1..4845
                     /product="ryanodine receptor 3-like isoform X4"
                     /calculated_mol_wt=547943
     Region          9..212
                     /region_name="Ins145_P3_rec"
                     /note="Inositol 1,4,5-trisphosphate/ryanodine receptor;
                     cl19745"
                     /db_xref="CDD:302989"
     Region          221..400
                     /region_name="MIR"
                     /note="MIR domain; pfam02815"
                     /db_xref="CDD:280906"
     Region          280..>305
                     /region_name="MIR"
                     /note="Domain in ryanodine and inositol trisphosphate
                     receptors and protein O-mannosyltransferases; smart00472"
                     /db_xref="CDD:197746"
     Region          450..638
                     /region_name="RYDR_ITPR"
                     /note="RIH domain; pfam01365"
                     /db_xref="CDD:279676"
     Region          649..800
                     /region_name="SPRY1_RyR"
                     /note="SPRY domain 1 (SPRY1) of ryanodine receptor (RyR);
                     cd12877"
                     /db_xref="CDD:240457"
     Region          857..946
                     /region_name="RyR"
                     /note="RyR domain; pfam02026"
                     /db_xref="CDD:280244"
     Region          971..1061
                     /region_name="RyR"
                     /note="RyR domain; pfam02026"
                     /db_xref="CDD:280244"
     Region          1079..1211
                     /region_name="SPRY2_RyR"
                     /note="SPRY domain 2 (SPRY2) of ryanodine receptor (RyR);
                     cd12878"
                     /db_xref="CDD:240458"
     Region          1328..1464
                     /region_name="SPRY3_RyR"
                     /note="SPRY domain 3 (SPRY3) of ryanodine receptor (RyR);
                     cd12879"
                     /db_xref="CDD:293937"
     Region          2032..2238
                     /region_name="RYDR_ITPR"
                     /note="RIH domain; pfam01365"
                     /db_xref="CDD:279676"
     Region          2605..2695
                     /region_name="RyR"
                     /note="RyR domain; pfam02026"
                     /db_xref="CDD:280244"
     Region          2721..2806
                     /region_name="RyR"
                     /note="RyR domain; pfam02026"
                     /db_xref="CDD:280244"
     Region          3729..3842
                     /region_name="RIH_assoc"
                     /note="RyR and IP3R Homology associated; pfam08454"
                     /db_xref="CDD:285630"
     Region          3926..3981
                     /region_name="EF-hand_7"
                     /note="EF-hand domain pair; pfam13499"
                     /db_xref="CDD:290234"
     Region          3934..3981
                     /region_name="EF-hand_8"
                     /note="EF-hand domain pair; pfam13833"
                     /db_xref="CDD:290545"
     Region          4230..4479
                     /region_name="RR_TM4-6"
                     /note="Ryanodine Receptor TM 4-6; pfam06459"
                     /db_xref="CDD:283990"
     Region          <4596..4756
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:278921"
     CDS             1..4845
                     /gene="LOC106608253"
                     /coded_by="XM_014206100.1:200..14737"
                     /db_xref="GeneID:106608253"
ORIGIN      
        1 maeggegedd iqflrtddev vlqsvatiqk enrkfclsve glgnrlcfle ptseakyvpp
       61 dlciccfile qslsvralqe mlahtvpnne gkadheqwaa qggghrtlly ghaillrhsf
      121 sgmyltclkt srsltdklsf dvglqedsig eacwwtihpa skqrsegekv rigddlilvs
      181 vsterylhls issgsfqvda sfmqtlwnvq ptcsgsnvav gflcgghvmh lchghdeslt
      241 ipgseaseme qrivnyemgk gasrarslwr leplrigwsg shirygqafr lrhlstgqyl
      301 alteehglvl qereksdtks tsfcfratke kiesgtknrd iegmgvaeik ygdsacfvmh
      361 vatglwlsyq apdakasrig plkrraclha eghmddgltl qrcqheeara vriirnttvl
      421 fshfikglds igrdknvevs lpnfdevlqt lddlieyfkq pdseleheek qtllrslikr
      481 qdlfkeegml allvmcidrl nlynsaahfg ehageeagaa wknilnllyq llaslikgnr
      541 nnctqfsrnl dwlvsklerl esssgilevl hciliespea lniiqkghik siisllykhg
      601 rnhkildvlc slcvcngvav ranqnlicdh llpkrdlllq trlvndvqsm rpniflgvae
      661 gsaqykkwyf elmidqvnhy vtsepshlrv gwastkgyap ypgggegwgg ngvgddlysy
      721 sfdglylwsg risravasin qhllnsddvv sccldlgaps msfringqpv qgmfedfntd
      781 gfffpvvsfs agvkvrfllg grhgdfkflp pagyspcyea llpkekmrve avkeykrdyg
      841 gvrdllgttq flsqasfipt pvdtsqivlp phldnvrdrl aenihelwgm nkielgwcyg
      901 kvrddnkrqh pclvdftklp eternynlqm ssetlktlla lgchvtqtnv naeedlkkvk
      961 lpkdyvmsng ykptpldlse vkltaghevl vdklaenahn vwakerikqg wtygiqqdvk
     1021 srrnprlvpy alldertkks nrdslreair tlvgygynid ppdqepchiv ekqsietirf
     1081 frveqtyavk tgkwyfefea ltggdmrvgw arpgcrsdfd lgmddqayvf dgykgrrmhm
     1141 garffgqswn egdvvgcmin medksmvftl ngellitnkg selcfvdfet ddgfipvccl
     1201 aqseigrmnl gkdassfkyy ttcglqegfe pfavnmnrev tmwfskrlpt fvnipkdhnh
     1261 ievtridgtv dnppclkvth ktfgtqqsns dmlycrlsmp velhaphvsp desqklsqpp
     1321 keddygritt yyhsvrvfag qdpasvwvgw vtpdyhyhsk qfslnktrtv tvtlgdergr
     1381 vhesvrrsnc ymvcagdvvg sshsssrsni dleigclvdl atgflsftan gkelattyev
     1441 esntklfpav fvrptstnlf qfefvkikaa mplssaifks eqrnpvpqcp prldvqtiva
     1501 vlwsrmpntf ltvetarvse rhgwvvqcle plqmmavhip eenrcldile lseneglrkf
     1561 hyhtlmlyca lcalgntrva halcshldqs qllytidnqy lsgmlregfy nvlmsihlet
     1621 akearlmmnn efiipvtdet rsiklfpdes krhslpgvgl stslkprlif splsfittkk
     1681 qqhlhspqip lgilkekais mlteavqggg shirdpvggs veyqfvpilk ligtllimgv
     1741 ltseevrlil llidpnvfge peeeeveaas agggekeevs sneekaveag eeetkdvkpt
     1801 vkgllektlp esvkrqmcel lhyfcdcelk qrieaivsfs dsfvsklqyn qkfrynelml
     1861 alnmsaavta kktkefrspp qeqinillnf aagedcpcpe eiqedlykfh delrlhcgip
     1921 veeeeeeedt sikgrllaml ykikgppkkl eeepteeeqa aptnlkelis qtmaswaqec
     1981 siqdpelvrv mfsllrrqyd gigallramk ksytisavsv qdcvnllasl gqirsllsvr
     2041 mgkeeeklmi dglgdimnnk vfyqhpnlmr vlgmhetvme vmvnvlggdk sqeiafpkmv
     2101 asccrflcyf crisrqnqka mfdhlsylle nssvglaspa mrgstpldva assvmdnnsl
     2161 alaleepdle kvvtylagcg lqscamllak gypdigwnpi egerylsflr favfsngesv
     2221 eensntvvkl lirrpecfgp alrgeggngl laamleaiki sedpaldlps tadgepsgsd
     2281 eeeevahtgn aimsfysali dllgrcapem hlinkgkgea lrirailrsl vpttdlvgii
     2341 siplkmpivn kdgsvtepdm sasfcpdhka pmvlfldrvy gvedqsfllh llevgflpdl
     2401 rasasldtdv lsttetalam nryigsallp lltrcadqfs gtehyaalid stlhtiyrls
     2461 kgrsltkaqr dsieecllai ckhlrpsmmq qllrrlvfdv pllaeyckmp lrlltehyeq
     2521 swmyyclpsg lgssgmasee ellltkklfw gifdslstkk fdsdlfktam aclsaiagal
     2581 ppdymdaspg vtlekqasvd ahgnfdpkpi ntanmslpek ldyiankfae hshvkwssek
     2641 vtagwkmgec vdddakthpl lkpykslsek eretyrwpvk eslksmlamg wnmertkege
     2701 amlirkqski sestqdndne fipeppldln nitlsrelqg mvevvaenyh niwakkkkae
     2761 lnskgggshp llvpydtlta kekyrdrekv qdlfkflqin gytitrglkd meqdsssmek
     2821 rfaytflkrl lkyvdsaqef iahleamats gktdksphdq eikffakvll plidmyfknh
     2881 smyflsspsk nlsssgyasn kekemitslf ckmaalvrhr islfgsdsai mvsclhilah
     2941 sldtrtvmks gsemvkagvr tlfenaaedl ektlemlklg kfsqsrsqmk glsqnityat
     3001 tallpiltal fehvtmhnfg vcllvddvql scyrivtcly slgtgkhifm erhlpalgec
     3061 latlvgampv aflepdlnah nplsvfntkt qrerailsmp dsveemcsdm prldrllkdi
     3121 ndisesgary tempqvievi lpmlcnylsy wwergtensa phtaccttvc shhlsiilgn
     3181 ilkilnnnlg iddapwmkri avysqpiick aaadllkshf lptleklrkk tvkvvaeeel
     3241 lkadikgdtq eaellildef avlcrdlyaf ypmliryvdn nrsrwlkrpd aqsnelftmv
     3301 aeifilwcks hnfkreeqnf vvqneinnls fltgehktkm sksggdqdrk hkkrrgelys
     3361 vqtslivaal kkmlpiglnm ctpgdqelis lakiryslkd tddevkdhlr enlhlqdksd
     3421 dlavqwqmnl ykdvvvvgse ehadpeqtvd riqsisaavf hleqveqplr mkkcvfqkll
     3481 skqrkravva cfrmaplynl prhrsinlfv lgyvrlwiet eeysfeerlv qdlaktpmki
     3541 veeeeeeeve iqpdplhqli lhfshnalte rsfleedply iayadmmaks caedeeeeee
     3601 eegkektfee kemekqkily qqarlharga aemvlqmisa skgrlgpmvt ctlklgisil
     3661 nggnvlvqqk mldylkekrd agffkslsgl mqscsvldln aferqnkaeg lgmvtdegss
     3721 skvltnddft kdlfrflqll ceghngdfqn flrtqtgntl tvniiistvd yllrlqesis
     3781 dfywyysgkd iideagqvnf skalavakqi fnslteyiqg pcignqqsla hsrlwdavvg
     3841 flhvfanmqm klsqdscqie llkelmdlqq dmvvmmlsll egnvvngtig kqmvdtlves
     3901 ssnvemilkf fdmflkikdl ttsdnfreyd pdnkgviskk dfqksmenqk qytqseiefl
     3961 lscaeadend mfnyeefver fhepakdigf niavlltnls ehmphdprla tflepaesvl
     4021 nyfepylgri eimgggkrie rvyfeisess rtqwekpqvk eskrqfifdv vneggesekm
     4081 emfvnfcedt ifemqlasqi sepevverpe eeeeevhnll eelaeqeeer eleassaftm
     4141 vcvsakkkis nfremltfks lkkqykkskk lsmkevilgf fsffwtlfag ffkgiyslif
     4201 gffhliwssm fggglvegak nmkvtdilgn mpdptqfgih gdvletekve vsdsvsggtd
     4261 qaikpsdkae qdilmeminp mpkkgeglkh vdpglgdvse nltaettatv ekknaasept
     4321 esepekadte kkekedkvkv eqpkeemaqd kpvlksrngq skeaptsffa sflaglevyq
     4381 akmlntlarn fynmrflalf vafainfill fyrvtaaedd eddswtssdd edeggeeyfv
     4441 leestgymap ilcflavfht alsilclvgy yflkvplvvf krekgiarll efeglyiteq
     4501 padddimgqw drlvintpsf pnnywdkfik rkvinkygdl ygaeriaell gldksaldfd
     4561 ptqetvveaa slvswlssid tkyhiwkmgv vltdnsflyl iwyatmsilg hynnfffaah
     4621 lldiamgfkt lrtilssvth ngkqlvltvg llavvvylyt vvafnffrkf ynksededap
     4681 dmkcddmmtc ylfhlyagvr agggigdele dpagdpyelw rilfditfff fvivillaii
     4741 qgliidafge lrdqqeqvke dmetkcficg igndyfdttp hgfethtlqe hnlanylffl
     4801 mylinkdete htgqesyvwk myqercwdff pagdcfrkqy edllg
//
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