GenomeNet

Database: RefSeq
Entry: XP_015039029
LinkDB: XP_015039029
Original site: XP_015039029 
LOCUS       XP_015039029            2131 aa            linear   INV 22-DEC-2015
DEFINITION  uncharacterized protein Dpse_GA15628, isoform N [Drosophila
            pseudoobscura pseudoobscura].
ACCESSION   XP_015039029
VERSION     XP_015039029.1
DBLINK      BioProject: PRJNA18793
            BioSample: SAMN00779672
DBSOURCE    REFSEQ: accession XM_015183543.1
KEYWORDS    RefSeq.
SOURCE      Drosophila pseudoobscura pseudoobscura
  ORGANISM  Drosophila pseudoobscura pseudoobscura
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (residues 1 to 2131)
  AUTHORS   English,A.C., Richards,S., Han,Y., Wang,M., Vee,V., Qu,J., Qin,X.,
            Muzny,D.M., Reid,J.G., Worley,K.C. and Gibbs,R.A.
  TITLE     Mind the gap: upgrading genomes with Pacific Biosciences RS
            long-read sequencing technology
  JOURNAL   PLoS ONE 7 (11), E47768 (2012)
   PUBMED   23185243
REFERENCE   2  (residues 1 to 2131)
  AUTHORS   Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B.,
            Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N.,
            Pollard,D.A., Sackton,T.B., Larracuente,A.M., Singh,N.D.,
            Abad,J.P., Abt,D.N., Adryan,B., Aguade,M., Akashi,H.,
            Anderson,W.W., Aquadro,C.F., Ardell,D.H., Arguello,R.,
            Artieri,C.G., Barbash,D.A., Barker,D., Barsanti,P., Batterham,P.,
            Batzoglou,S., Begun,D., Bhutkar,A., Blanco,E., Bosak,S.A.,
            Bradley,R.K., Brand,A.D., Brent,M.R., Brooks,A.N., Brown,R.H.,
            Butlin,R.K., Caggese,C., Calvi,B.R., Bernardo de Carvalho,A.,
            Caspi,A., Castrezana,S., Celniker,S.E., Chang,J.L., Chapple,C.,
            Chatterji,S., Chinwalla,A., Civetta,A., Clifton,S.W., Comeron,J.M.,
            Costello,J.C., Coyne,J.A., Daub,J., David,R.G., Delcher,A.L.,
            Delehaunty,K., Do,C.B., Ebling,H., Edwards,K., Eickbush,T.,
            Evans,J.D., Filipski,A., Findeiss,S., Freyhult,E., Fulton,L.,
            Fulton,R., Garcia,A.C., Gardiner,A., Garfield,D.A., Garvin,B.E.,
            Gibson,G., Gilbert,D., Gnerre,S., Godfrey,J., Good,R., Gotea,V.,
            Gravely,B., Greenberg,A.J., Griffiths-Jones,S., Gross,S., Guigo,R.,
            Gustafson,E.A., Haerty,W., Hahn,M.W., Halligan,D.L., Halpern,A.L.,
            Halter,G.M., Han,M.V., Heger,A., Hillier,L., Hinrichs,A.S.,
            Holmes,I., Hoskins,R.A., Hubisz,M.J., Hultmark,D., Huntley,M.A.,
            Jaffe,D.B., Jagadeeshan,S., Jeck,W.R., Johnson,J., Jones,C.D.,
            Jordan,W.C., Karpen,G.H., Kataoka,E., Keightley,P.D.,
            Kheradpour,P., Kirkness,E.F., Koerich,L.B., Kristiansen,K.,
            Kudrna,D., Kulathinal,R.J., Kumar,S., Kwok,R., Lander,E.,
            Langley,C.H., Lapoint,R., Lazzaro,B.P., Lee,S.J., Levesque,L.,
            Li,R., Lin,C.F., Lin,M.F., Lindblad-Toh,K., Llopart,A., Long,M.,
            Low,L., Lozovsky,E., Lu,J., Luo,M., Machado,C.A., Makalowski,W.,
            Marzo,M., Matsuda,M., Matzkin,L., McAllister,B., McBride,C.S.,
            McKernan,B., McKernan,K., Mendez-Lago,M., Minx,P.,
            Mollenhauer,M.U., Montooth,K., Mount,S.M., Mu,X., Myers,E.,
            Negre,B., Newfeld,S., Nielsen,R., Noor,M.A., O'Grady,P.,
            Pachter,L., Papaceit,M., Parisi,M.J., Parisi,M., Parts,L.,
            Pedersen,J.S., Pesole,G., Phillippy,A.M., Ponting,C.P., Pop,M.,
            Porcelli,D., Powell,J.R., Prohaska,S., Pruitt,K., Puig,M.,
            Quesneville,H., Ram,K.R., Rand,D., Rasmussen,M.D., Reed,L.K.,
            Reenan,R., Reily,A., Remington,K.A., Rieger,T.T., Ritchie,M.G.,
            Robin,C., Rogers,Y.H., Rohde,C., Rozas,J., Rubenfield,M.J.,
            Ruiz,A., Russo,S., Salzberg,S.L., Sanchez-Gracia,A., Saranga,D.J.,
            Sato,H., Schaeffer,S.W., Schatz,M.C., Schlenke,T., Schwartz,R.,
            Segarra,C., Singh,R.S., Sirot,L., Sirota,M., Sisneros,N.B.,
            Smith,C.D., Smith,T.F., Spieth,J., Stage,D.E., Stark,A.,
            Stephan,W., Strausberg,R.L., Strempel,S., Sturgill,D., Sutton,G.,
            Sutton,G.G., Tao,W., Teichmann,S., Tobari,Y.N., Tomimura,Y.,
            Tsolas,J.M., Valente,V.L., Venter,E., Venter,J.C., Vicario,S.,
            Vieira,F.G., Vilella,A.J., Villasante,A., Walenz,B., Wang,J.,
            Wasserman,M., Watts,T., Wilson,D., Wilson,R.K., Wing,R.A.,
            Wolfner,M.F., Wong,A., Wong,G.K., Wu,C.I., Wu,G., Yamamoto,D.,
            Yang,H.P., Yang,S.P., Yorke,J.A., Yoshida,K., Zdobnov,E., Zhang,P.,
            Zhang,Y., Zimin,A.V., Baldwin,J., Abdouelleil,A., Abdulkadir,J.,
            Abebe,A., Abera,B., Abreu,J., Acer,S.C., Aftuck,L., Alexander,A.,
            An,P., Anderson,E., Anderson,S., Arachi,H., Azer,M.,
            Bachantsang,P., Barry,A., Bayul,T., Berlin,A., Bessette,D.,
            Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B.,
            Bourzgui,I., Brown,A., Cahill,P., Channer,S., Cheshatsang,Y.,
            Chuda,L., Citroen,M., Collymore,A., Cooke,P., Costello,M.,
            D'Aco,K., Daza,R., De Haan,G., DeGray,S., DeMaso,C., Dhargay,N.,
            Dooley,K., Dooley,E., Doricent,M., Dorje,P., Dorjee,K., Dupes,A.,
            Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Fisher,S.,
            Foley,C.D., Franke,A., Friedrich,D., Gadbois,L., Gearin,G.,
            Gearin,C.R., Giannoukos,G., Goode,T., Graham,J., Grandbois,E.,
            Grewal,S., Gyaltsen,K., Hafez,N., Hagos,B., Hall,J., Henson,C.,
            Hollinger,A., Honan,T., Huard,M.D., Hughes,L., Hurhula,B.,
            Husby,M.E., Kamat,A., Kanga,B., Kashin,S., Khazanovich,D.,
            Kisner,P., Lance,K., Lara,M., Lee,W., Lennon,N., Letendre,F.,
            LeVine,R., Lipovsky,A., Liu,X., Liu,J., Liu,S., Lokyitsang,T.,
            Lokyitsang,Y., Lubonja,R., Lui,A., MacDonald,P., Magnisalis,V.,
            Maru,K., Matthews,C., McCusker,W., McDonough,S., Mehta,T.,
            Meldrim,J., Meneus,L., Mihai,O., Mihalev,A., Mihova,T.,
            Mittelman,R., Mlenga,V., Montmayeur,A., Mulrain,L., Navidi,A.,
            Naylor,J., Negash,T., Nguyen,T., Nguyen,N., Nicol,R., Norbu,C.,
            Norbu,N., Novod,N., O'Neill,B., Osman,S., Markiewicz,E.,
            Oyono,O.L., Patti,C., Phunkhang,P., Pierre,F., Priest,M.,
            Raghuraman,S., Rege,F., Reyes,R., Rise,C., Rogov,P., Ross,K.,
            Ryan,E., Settipalli,S., Shea,T., Sherpa,N., Shi,L., Shih,D.,
            Sparrow,T., Spaulding,J., Stalker,J., Stange-Thomann,N.,
            Stavropoulos,S., Stone,C., Strader,C., Tesfaye,S., Thomson,T.,
            Thoulutsang,Y., Thoulutsang,D., Topham,K., Topping,I., Tsamla,T.,
            Vassiliev,H., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M.,
            Wilkinson,J., Wilson,A., Yadav,S., Young,G., Yu,Q., Zembek,L.,
            Zhong,D., Zimmer,A., Zwirko,Z., Jaffe,D.B., Alvarez,P.,
            Brockman,W., Butler,J., Chin,C., Gnerre,S., Grabherr,M., Kleber,M.,
            Mauceli,E. and MacCallum,I.
  CONSRTM   Drosophila 12 Genomes Consortium
  TITLE     Evolution of genes and genomes on the Drosophila phylogeny
  JOURNAL   Nature 450 (7167), 203-218 (2007)
   PUBMED   17994087
REFERENCE   3  (residues 1 to 2131)
  AUTHORS   Richards,S., Liu,Y., Bettencourt,B.R., Hradecky,P., Letovsky,S.,
            Nielsen,R., Thornton,K., Hubisz,M.J., Chen,R., Meisel,R.P.,
            Couronne,O., Hua,S., Smith,M.A., Zhang,P., Liu,J., Bussemaker,H.J.,
            van Batenburg,M.F., Howells,S.L., Scherer,S.E., Sodergren,E.,
            Matthews,B.B., Crosby,M.A., Schroeder,A.J., Ortiz-Barrientos,D.,
            Rives,C.M., Metzker,M.L., Muzny,D.M., Scott,G., Steffen,D.,
            Wheeler,D.A., Worley,K.C., Havlak,P., Durbin,K.J., Egan,A.,
            Gill,R., Hume,J., Morgan,M.B., Miner,G., Hamilton,C., Huang,Y.,
            Waldron,L., Verduzco,D., Clerc-Blankenburg,K.P., Dubchak,I.,
            Noor,M.A., Anderson,W., White,K.P., Clark,A.G., Schaeffer,S.W.,
            Gelbart,W., Weinstock,G.M. and Gibbs,R.A.
  TITLE     Comparative genome sequencing of Drosophila pseudoobscura:
            chromosomal, gene, and cis-element evolution
  JOURNAL   Genome Res. 15 (1), 1-18 (2005)
   PUBMED   15632085
REFERENCE   4  (residues 1 to 2131)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (residues 1 to 2131)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2015) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   6  (residues 1 to 2131)
  AUTHORS   English,A.C., Richards,S., Han,Y., Wang,M., Batterton,M.N., Vee,V.,
            Qu,J., Qin,X., Muzny,D.M., Worley,K.C., Reid,J.G. and Gibbs,R.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2012) Human Genome Sequencing Center, Department
            of Molecular and Human Genetics, Baylor College of Medicine, One
            Baylor Plaza, Houston, TX 77030, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KRT01467.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 3.03
            Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Drosophila pseudoobscura pseudoobscura"
                     /strain="MV2-25"
                     /sub_species="pseudoobscura"
                     /db_xref="taxon:46245"
                     /chromosome="3"
     Protein         1..2131
                     /product="uncharacterized protein, isoform N"
                     /name="GA15628 gene product from transcript GA15628-RN"
                     /note="Dpse\GA15628-PN"
                     /calculated_mol_wt=236214
     Region          <835..1286
                     /region_name="trp"
                     /note="transient-receptor-potential calcium channel
                     protein; TIGR00870"
                     /db_xref="CDD:273311"
     Region          1354..1405
                     /region_name="TRPM_tetra"
                     /note="Tetramerization domain of TRPM; pfam16519"
                     /db_xref="CDD:293127"
     CDS             1..2131
                     /gene="Dpse\GA15628"
                     /locus_tag="Dpse_GA15628"
                     /old_locus_tag="GA15628"
                     /gene_synonym="dpse_GLEANR_14970; GA15628"
                     /coded_by="XM_015183543.1:301..6696"
                     /db_xref="FLYBASE:FBpp0335153"
                     /db_xref="GeneID:4803359"
                     /db_xref="FLYBASE:FBgn0075645"
ORIGIN      
        1 mlkqkrlakq kpkakpipwg lkkicwglin itvprhqprs wietnfqkre cikfipcpkd
       61 dtrcccgqaq ithqtiqgie sgspgdlwlp tkhtrpqptd aygtiefqgg ahptkaqyvr
      121 lsfdtrpell vqlftkewnl elpkllitvq ggkanfdlqa klkkeirkgl lkaakttgaw
      181 iftggtntgv tkqvgdalll egqqrtgrvv sigiapwgiv ernhellghn revpchsiss
      241 prsklavlnn rhayfllvdn gtqakygael ilrrklekfi snlklhpfth sstpvvclvi
      301 eggtntirav leyvtdsppv pvvvcdgsgr aadllafvhk yasdgeeqpv lesmrdylig
      361 tiqktfevgl dqaeklyqel lqctrnknli tvfriqekpe geaqeldqti ltalfksqhl
      421 sppeqlslal twnrvdiars eifvygqewp hgaldeammq alehdridfv klllengvsm
      481 kkfltiprle elyntkhgpa ntlgyilrdv rphipkgyiy tlhdiglvin klmggayrsy
      541 ytrrkfrpiy akvmnsyana crksstyqyq ryaganslsl vtgllpftse malfefpfne
      601 lliwavltkr qqmallmwth geealakslv scklykamah eaaeddldte iyeelrsyak
      661 efeskgnkll dfsyrqdaek aqrlltcelh swsnqsclsl avaanhrall ahpcsqvila
      721 dlwmgglrtr kntnfkvilg lvmplyirql dfkskeelqq mpqteeehle nqnldnddsd
      781 rsqpdaesal lkakrsislr yrmgantynr ekckliaaet sspsyksaan stdalladty
      841 svrdtkvhen gkvnltagae eppsnvsltd sdpaqfreff nlseyneikq hqplrlkkkf
      901 hefytapitk fwadsiaymf flimfsftvl vkmgpvprwq ewysiayitt lgfekvreii
      961 ssepvaithk fsvwawnmwn pcdgaaiilf liglafrfrp ntmdigrviy cvdsiywylr
     1021 ilnilgvnky lgplvtmmgk mvknmiyfvv llavvlmsfg vsrqailypn septwrlire
     1081 viagsivapg fpgalghssr shnargggyg stfspgsfaa gyhrghatas sptatatttt
     1141 ttstvrplss atatapetgs aatpaphapt gttfnssehg hlsggnltnv tyqpyfmlyg
     1201 evfaddidpp cgedprqpac vtghwvtpit msmylliani llinlliavf nnifnevnsv
     1261 shqvwmfqrf tvvmeyqqkp vlpppfiafc hfysllkycv rkakglevqr dnglklflek
     1321 ddlerlydfe eecvegffhe qeiilnqstd ervknttdrv etmsqkiedi nqkeniqtat
     1381 vqniefrlrk meesseqils hlavihrfms thtvgtddmr gsainipaei hrirtismsd
     1441 tdggggssgn gggggggaav plvlgaglnv nslqvtnrrr fnrsltevrp dayildegth
     1501 fevvplpeep devvksreal neqvvrkasm qseadsdiyl plsqrpstce tvkrtpyvtv
     1561 rqdtgastes kdtltplgtn dddqtlvggd nsddaapdin feaarhralr qrtvslcrrn
     1621 setyslagad inrshislnq ltmlsrrqms ltqsepdsdk dappaaagst hpgksvlhak
     1681 psrnillklh seytsitdel esvchmiasp tvslqsnkas ldrpktemsr aeaaalqekk
     1741 hlkeceendy rileglfear gsidasaeaf esvisvdysh ryplrretav elspskpsae
     1801 vdlmgggggg gdssdtsgag scsamgavss gfqlknerpw qrnssmeqqt ypsplvpsra
     1861 tsdflnppfe ssgrlfkkss eslqknsste tdysahpyrf ikqssnetnt sltgsynvdt
     1921 psltaepsld acdshsatgi sisvgaaggs aaryqpirtt sigaadgrql rdesssslqs
     1981 pelgvqcsap vtmqappavp trpmllkkqf sldkgkpqqa qitaeamatp esgidaatva
     2041 qarvklissl kpqshtsklg mnvlkessss tegsregegl sttssaknsn palsipqist
     2101 hlvqdeiakl ssniksstes ekdppynetm c
//
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