LOCUS XP_017346360 1538 aa linear VRT 09-MAR-2023
DEFINITION rho GTPase-activating protein 35 [Ictalurus punctatus].
ACCESSION XP_017346360
VERSION XP_017346360.1
DBLINK BioProject: PRJNA327588
DBSOURCE REFSEQ: accession XM_017490871.3
KEYWORDS RefSeq.
SOURCE Ictalurus punctatus (channel catfish)
ORGANISM Ictalurus punctatus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
Ictaluridae; Ictalurus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_030432) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_001660625.3-RS_2023_03
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 03/03/2023
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1538
/organism="Ictalurus punctatus"
/db_xref="taxon:7998"
/chromosome="17"
/sex="female"
/tissue_type="blood"
/dev_stage="adult"
/breed="USDA103"
/note="double haploid"
Protein 1..1538
/product="rho GTPase-activating protein 35"
/calculated_mol_wt=173373
Site 28..35
/site_type="other"
/note="G1 box"
/db_xref="CDD:206648"
Site order(30..36,98,199..200,202,228..230)
/site_type="other"
/note="GTP/Mg2+ binding site [chemical binding]"
/db_xref="CDD:206648"
Site 66
/site_type="other"
/note="G2 box"
/db_xref="CDD:206648"
Site order(70,72..73)
/site_type="other"
/note="Switch I region"
/db_xref="CDD:206648"
Site order(94,96..98)
/site_type="other"
/note="G3 box"
/db_xref="CDD:206648"
Site order(97..98,157..158)
/site_type="other"
/note="Switch II region"
/db_xref="CDD:206648"
Region <157..246
/region_name="P-loop_NTPase"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; cl38936"
/db_xref="CDD:453896"
Site 199..202
/site_type="other"
/note="G4 box"
/db_xref="CDD:206648"
Site 228..230
/site_type="other"
/note="G5 box"
/db_xref="CDD:206648"
Region 260..339
/region_name="RhoGAP-FF1"
/note="p190-A and -B Rho GAPs FF domain; pfam16512"
/db_xref="CDD:435388"
Region 430..482
/region_name="FF"
/note="Contains two conserved F residues; smart00441"
/db_xref="CDD:128718"
Region 557..1267
/region_name="RhoGAP_pG1_pG2"
/note="p190RhoGAP, pG1 and pG2 domains; pfam19518"
/db_xref="CDD:437350"
Region 1263..1447
/region_name="RhoGAP_p190"
/note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
small GTPases) domain of p190-like proteins. p190, also
named RhoGAP5, plays a role in neuritogenesis and axon
branch stability. p190 shows a preference for Rho, over
Rac and Cdc42, and consists of an...; cd04373"
/db_xref="CDD:239838"
Site order(1300,1338,1342,1411,1414..1415,1438)
/site_type="other"
/note="putative GTPase interaction site [polypeptide
binding]"
/db_xref="CDD:239838"
Site 1300
/site_type="active"
/note="catalytic residue [active]"
/db_xref="CDD:239838"
CDS 1..1538
/gene="arhgap35a"
/coded_by="XM_017490871.3:1072..5688"
/db_xref="GeneID:108277872"
ORIGIN
1 mmakkhdara ptynlvvvgl sgtekekgqc gvgksclcnr fvrpsaddfy ldhtsvlsts
61 dfggrvvnnd hflfwgeasr pleegpecrm hvveqtefid dqtfqphrst alqpyikraa
121 stklasaekl myfctdqlgl eqdfeqkqmp egkllvdgfl lcvdvsrgmn rnfddqmkfi
181 snlynqlakt kkpvvlvltk cdegveryik dshtfalakk nlqvvetsar snvnvdlafl
241 tlvqlidksr gkpkiipyfe alkqqsqqia sakdryewlv scivknhnet wpninrrmqt
301 speykdyvfl egtskakklf qqhvhrlkqd hiekrrriyl stlpqalctl vpdldeidhl
361 swsgvqkvle tkrgfsqwfv ilddtpwett phidnmeder ipqdlletpa aeviyeshle
421 hlrnerkrae mrrefkeklv aspfvtpgkp weearsfimn eefyqwleep eyldmynkhq
481 keiidqaked fqellleyse lfyelevdak pskekmgaiq evlgeeqrfk alqklqaerd
541 alvlkhihfv yhptketcpn spycvdskie qilatrfptr yafdgtlksq ygegkvdrin
601 lvilgkdgla relaneiram ctsddrytld gktyelalrp iegnvrlpvn sfhtptftph
661 gclclynske slsyvvesie klrestigrr dnslallpms lllvtkrgvg sigdiggeta
721 qsliiqgqqv agklqcayld paspgagyar nlnekqinqv lkslldvqrp lgslgssspp
781 lpaprarfrd shaqqtsead lhvvmcimcg dtydvdqlls pflhsqhcrp sanlssgtsv
841 lldltigsqr qtidlavlsy hstfslrksr lvhgyiavys akrkasletl caflcevqdi
901 ipvqllavge tqaeltesev ardqlvegee laheiegrfs svvcgpggvv gglhridlfq
961 pflkevvekr tiveathmyd nvaeacstne svhsprcgsp svpmldsedd vepsppcpiy
1021 rddstlthgf kfsdlessdt fsviseistf esklnnkvpp qvrpkptvtf gkvslgsymd
1081 hggnrrslps vtwppssdgg ydpsdysepv davpkprpte eeniysvphd stqgkiitir
1141 nankshsngg gngsdseadn sslerrrnls tvgikprlyr drskrlgkfs nfrtsfigsd
1201 delggppktk edemgiqkgd nslneecedp krnkilrslr rtgkktrpkp rqsiskqles
1261 nyfgvplvnv vtaerpiplf iekciryiea tglstegiyr vsgnkaemes iqrqfdqdsn
1321 ldlvekdfsv ntvagamksf fselpdplvp ynmqvelvea fkindreqrf ltmkdvlrrf
1381 prenydvfky vishlnkvsq nsrvnlmtsd nlsicfwptl mrpdfttmda ltatrtyqti
1441 ietfiyqcaf ffynqplvdt tsglpglpgs ptatlsstts msgsaysscy tpvqhvatpf
1501 sqsqqspphs ppptpqspiq sllppmhphh tsteqhtl
//
