LOCUS XP_846088 1077 aa linear INV 10-APR-2018
DEFINITION SNF2 DNA repair protein, putative [Trypanosoma brucei brucei
TREU927].
ACCESSION XP_846088
VERSION XP_846088.1
DBLINK BioProject: PRJNA15565
BioSample: SAMN02953625
DBSOURCE REFSEQ: accession XM_840995.1
KEYWORDS RefSeq.
SOURCE Trypanosoma brucei brucei TREU927
ORGANISM Trypanosoma brucei brucei TREU927
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina;
Trypanosomatida; Trypanosomatidae; Trypanosoma.
REFERENCE 1 (residues 1 to 1077)
AUTHORS Berriman,M., Ghedin,E., Hertz-Fowler,C., Blandin,G., Renauld,H.,
Bartholomeu,D.C., Lennard,N.J., Caler,E., Hamlin,N.E., Haas,B.,
Bohme,U., Hannick,L., Aslett,M.A., Shallom,J., Marcello,L., Hou,L.,
Wickstead,B., Alsmark,U.C., Arrowsmith,C., Atkin,R.J., Barron,A.J.,
Bringaud,F., Brooks,K., Carrington,M., Cherevach,I.,
Chillingworth,T.J., Churcher,C., Clark,L.N., Corton,C.H.,
Cronin,A., Davies,R.M., Doggett,J., Djikeng,A., Feldblyum,T.,
Field,M.C., Fraser,A., Goodhead,I., Hance,Z., Harper,D.,
Harris,B.R., Hauser,H., Hostetler,J., Ivens,A., Jagels,K.,
Johnson,D., Johnson,J., Jones,K., Kerhornou,A.X., Koo,H., Larke,N.,
Landfear,S., Larkin,C., Leech,V., Line,A., Lord,A., Macleod,A.,
Mooney,P.J., Moule,S., Martin,D.M., Morgan,G.W., Mungall,K.,
Norbertczak,H., Ormond,D., Pai,G., Peacock,C.S., Peterson,J.,
Quail,M.A., Rabbinowitsch,E., Rajandream,M.A., Reitter,C.,
Salzberg,S.L., Sanders,M., Schobel,S., Sharp,S., Simmonds,M.,
Simpson,A.J., Tallon,L., Turner,C.M., Tait,A., Tivey,A.R., Van
Aken,S., Walker,D., Wanless,D., Wang,S., White,B., White,O.,
Whitehead,S., Woodward,J., Wortman,J., Adams,M.D., Embley,T.M.,
Gull,K., Ullu,E., Barry,J.D., Fairlamb,A.H., Opperdoes,F.,
Barrell,B.G., Donelson,J.E., Hall,N., Fraser,C.M., Melville,S.E.
and El-Sayed,N.M.
TITLE The genome of the African trypanosome Trypanosoma brucei
JOURNAL Science 309 (5733), 416-422 (2005)
PUBMED 16020726
REFERENCE 2 (residues 1 to 1077)
AUTHORS El-Sayed,N.M., Myler,P.J., Blandin,G., Berriman,M., Crabtree,J.,
Aggarwal,G., Caler,E., Renauld,H., Worthey,E.A., Hertz-Fowler,C.,
Ghedin,E., Peacock,C., Bartholomeu,D.C., Haas,B.J., Tran,A.N.,
Wortman,J.R., Alsmark,U.C., Angiuoli,S., Anupama,A., Badger,J.,
Bringaud,F., Cadag,E., Carlton,J.M., Cerqueira,G.C., Creasy,T.,
Delcher,A.L., Djikeng,A., Embley,T.M., Hauser,C., Ivens,A.C.,
Kummerfeld,S.K., Pereira-Leal,J.B., Nilsson,D., Peterson,J.,
Salzberg,S.L., Shallom,J., Silva,J.C., Sundaram,J.,
Westenberger,S., White,O., Melville,S.E., Donelson,J.E.,
Andersson,B., Stuart,K.D. and Hall,N.
TITLE Comparative genomics of trypanosomatid parasitic protozoa
JOURNAL Science 309 (5733), 404-409 (2005)
PUBMED 16020724
REFERENCE 3 (residues 1 to 1077)
AUTHORS Ghedin,E., Blandin,G., Bartholomeu,D., Caler,E., Haas,B.,
Hannick,L., Shallom,J., Hou,L., Djikeng,A., Feldblyum,T.,
Hostetler,J., Johnson,J., Jones,K., Koo,H.L., Larkin,C., Pai,G.,
Peterson,J., Khalak,H.G., Salzberg,S., Simpson,A.J., Tallon,L., Van
Aken,S., Wanless,D., White,O., Wortman,J., Fraser,C.M. and
El-Sayed,N.M.A.
TITLE Sequencing, closure, and annotation of Trypanosoma brucei
chromosomes 2 through 8
JOURNAL Unpublished
REFERENCE 4 (residues 1 to 1077)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-APR-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 5 (residues 1 to 1077)
AUTHORS Haas,B., Blandin,G. and El-Sayed,N.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2005) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AAZ12529.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..1077
/organism="Trypanosoma brucei brucei TREU927"
/strain="927/4 GUTat10.1"
/isolate="927/4 GUTat10.1"
/sub_species="brucei"
/db_xref="taxon:185431"
/chromosome="7"
/note="single VAT derivative of TREU (Trypanosomiasis
Research Edinburgh University) 927/4 (GPAL/KE/70/EATRO
1534)"
Protein 1..1077
/product="SNF2 DNA repair protein, putative"
/calculated_mol_wt=121317
Region 195..474
/region_name="JBP"
/note="J-binding protein; cd20332"
/db_xref="CDD:380678"
Site order(305,380,393..394,459,461,463..464)
/site_type="other"
/note="putative DNA binding site [nucleotide binding]"
/db_xref="CDD:380678"
Site order(305,380,393,396,459,461,463)
/site_type="other"
/note="putative chemical substrate binding site [chemical
binding]"
/db_xref="CDD:380678"
Site order(382,391,393,404,412,441,443,455,459)
/site_type="other"
/note="putative alpha-ketoglutarate binding site [chemical
binding]"
/db_xref="CDD:380678"
Region 519..704
/region_name="DEXHc_Snf"
/note="DEXH/Q-box helicase domain of DEAD-like helicase
Snf family proteins; cd17919"
/db_xref="CDD:350677"
Site order(519,523,547..552,657..658)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350677"
Region 868..993
/region_name="SF2_C_SNF"
/note="C-terminal helicase domain of the SNF family
helicases; cd18793"
/db_xref="CDD:350180"
Site order(895..896,904,946,967..968)
/site_type="DNA binding"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350180"
Site order(952..953,955,978,981)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350180"
CDS 1..1077
/locus_tag="Tb927.7.4650"
/gene_synonym="Tb07.26A24.600"
/coded_by="XM_840995.1:1..3234"
/note="similar to DNA repair protein rhp54 (RAD54 homolog
1). (Swiss-Prot:P41410) [Schizosaccharomyces pombe]"
/db_xref="GeneID:3658676"
ORIGIN
1 mpmfmdgasq vlqqvlqtvl vtsepaivip gsflgeldvi vdeaknhgmk lvsipkggit
61 ilppipmses sltrlckdyy glktdaerla lfsnleetfp tapgvslpcr llyhprdyic
121 rivhlcaelv tasdeeyqka ydivpllhir pvqnvceelr rqfragaltq rlplgqrvdv
181 qfkrtvvhld gsmdpfprna aeaavniapv aldavddiye gfdvtgtevv diptgkvsey
241 lsekdfelvt edsvlldptg krvqaifirg gidkdicrra aadvegvatk qnmrrltngg
301 vrnpdtgilg yydylnnptk rkcrmteftr rnwgkiigpc gellqlldql ykenapdhye
361 lqrrvippey mlfntvfstv svnknfrtav hrdkgdfrgg ltalcvldgn yegcylalks
421 arkafclqvg dvlffdssle hgntevhnre gswrrisivc ylrcglmsht cetersmrlr
481 nqimsdrlha dsadsvvnln gvtghlpplc ipfkiaktls ltqhaalrfv srrikegdgc
541 vlaltmglgk tlvslticys yiynngpcdi livapktllq hwmqeakkwk dyglvfpgfi
601 vlnnvdsssf eddlsnyeqq gtttnpkksy vfvinpgyik sflsrvkgfr palivvdegh
661 cisskesklr evldslycsa rvvltgtpvq nnaeelyrlv gwvddkvhst lpqrdfnefs
721 nsinryvngd dsafcdalfa qryihewmsp yvftvmkvdl pplhdyiiic nfsavqqkmf
781 eerikvdatd nllclkaseh rpyhlsthpl cflgfltgiw rtgqvdieee pgefeelgty
841 rlsrdddala kdcsslleng kladfvalsg kltalisilh sifekmekav ifsqyigsqd
901 fiartltayk isvvtirgkd cqqrrrrvve mfrddknvlc lvvstqigay gldltaanhv
961 ilwdtwwnpq vesqaiarcy rqnqskavia yklasgfeda tvlkaqarkr alfkclinee
1021 tsqvvpghdl vdytsseedd drrhlwetlk tctleggkpa vtkiirnidt vkserwi
//
