KEGG   Cupriavidus necator H16: H16_B2551
Entry
H16_B2551         CDS       T00416                                 
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase II, adenosine deaminase
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
reh  Cupriavidus necator H16
Pathway
reh03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:reh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    H16_B2551 (alkA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:reh03000]
    H16_B2551 (alkA)
   03400 DNA repair and recombination proteins [BR:reh03400]
    H16_B2551 (alkA)
Enzymes [BR:reh01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     H16_B2551 (alkA)
Transcription factors [BR:reh03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    H16_B2551 (alkA)
DNA repair and recombination proteins [BR:reh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     H16_B2551 (alkA)
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HTH_AraC HhH-GPD
Other DBs
NCBI-ProteinID: CAJ97333
UniProt: Q0JY41
Position
2:complement(2877265..2878746)
AA seq 493 aa
MHLDPDTCYKAVASHDRRFDGRFFVGVSSTGVYCRPVCAVRTPKRENCTFYESAAAAEKH
GFRPCLRCRPELAPGHGLADISGRLAQAAATLIDEGFMAEGSVATLAARIGVTERHLRRL
FDAQFGVSVLEYAQTQRLLLAKRLLADTALPVTEVALAAGFGSVRRFNDVLKTRYGLTPL
ALRRRAADGVADRLVFDLGYRPPFAWEAWLRFLATRAVDGIEAIRDGTYMRTLLVDAGGS
THTGWVRIEHVPRRLVLRVTLSASLARVIPQALGKVRRLCDLGCRPDVVDRHLGELAEAM
PGVRLPGSVDGFEIAVRAVVGQVISVVQARRILGALARHAGQALDGTPPDGLRYTFPSAA
AIATLPEQGLRDAGVSAGKARTLLALAQRVANGTLALDAHAQPELTVAALREVDGIGDWT
AQYVAMRALGWPDAFPGTDYALRKVLGVSTVRAMHERTAQWAPWRAYAAIHLWHRYEAMK
DAASAAAEPETIT
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgcacctcgatcccgacacctgctacaaggccgtcgcctcgcacgaccgccgcttcgac
ggacgcttcttcgtgggcgtgtcgtcgaccggcgtgtactgccggcccgtgtgcgcagta
cgcacgcccaagcgcgaaaactgcaccttctacgagagcgccgcggcggcggagaagcat
ggcttccgcccctgcctgcgctgccgtccggagcttgcgcccgggcatgggctggccgat
atttcaggccggctggcgcaggcagcggccacgctgatcgacgagggcttcatggccgaa
ggcagcgtggccacgctggcggcgcgcatcggcgtgaccgagcggcacctgcggcgcctg
ttcgatgcgcagttcggcgtgtcggtgcttgagtacgcgcagacgcagcggctgctgctg
gccaagcgcttgctggccgacaccgcgctgccggtgaccgaagtggcgctggcggcgggt
ttcggcagcgtgcgccgcttcaacgatgtgctgaagacccgctacggcctgacgccgctg
gcgctgcgccgccgcgccgccgacggcgtggccgaccggctggtgttcgacctgggttac
cgcccgccgtttgcctgggaggcatggctgcgtttcctggctacccgcgcggtggatggc
atcgaggcgatccgggacggcacctatatgcgcacgctgctggtggatgccggcggcagc
acgcacaccggctgggtacggatcgaacacgtgccgcgccggctggtgctgcgcgtgacg
ttgtcggcctcgctggcgcgcgtcattccgcaggcgctgggcaaggtgcgccgcctgtgc
gacctgggctgccgcccggacgtggtggaccggcacctgggcgagcttgccgaggccatg
ccgggcgtgcgcctgccgggcagcgtcgatggcttcgagatcgcggtgcgcgcggtggtg
gggcaggtgatctcggtggtgcaggcgcggcgcatcctgggcgcgctggcgcggcacgcg
ggacaggcgctggacggcacgcccccggacggcctgcgctacacgttcccgagtgccgcc
gccattgccacactgccagagcaaggcttgcgcgatgccggggtgtcggcgggcaaggcg
cgcacgctgctggcgctggcgcagcgcgtggccaacggcacgctggccctcgatgcgcac
gcgcagccggaactgaccgtggcggcgctgcgcgaggtcgacggcatcggcgactggacc
gcgcagtatgtcgccatgcgcgcgctgggctggcccgatgcgttccccggcaccgactat
gcgctgcgcaaggtgctgggcgtcagtaccgtgcgcgcgatgcacgagcgcaccgcgcaa
tgggcaccgtggcgtgcctacgccgccatccacctgtggcatcgctacgaagcgatgaag
gacgcggccagcgccgcggccgaaccggagacgatcacatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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