KEGG   Rhizobium etli bv. mimosae Mim1: REMIM1_CH01669
Entry
REMIM1_CH01669    CDS       T02778                                 
Name
(GenBank) ribonuclease E/G protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
rel  Rhizobium etli bv. mimosae Mim1
Pathway
rel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    REMIM1_CH01669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rel03019]
    REMIM1_CH01669
   03009 Ribosome biogenesis [BR:rel03009]
    REMIM1_CH01669
Enzymes [BR:rel01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     REMIM1_CH01669
Messenger RNA biogenesis [BR:rel03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     REMIM1_CH01669
Ribosome biogenesis [BR:rel03009]
 Prokaryotic type
  rRNA processing factors
   REMIM1_CH01669
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 CDC45 zf-CCHC
Other DBs
NCBI-ProteinID: AGS21492
UniProt: S5SH78
Position
complement(1690824..1693709)
AA seq 961 aa
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP
DVGIVSAEAPEPVVAADEATTEEIAAAPEIVAPPAVAEEAPAKKAKPRRSRKKVAETTAT
EDAVPTDVEAEGASTVDNDDDTPAGGTMAAMVETDTISEDIDTSKRRHDDDDDDDDHGEE
EVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEV
KRDFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREA
KDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVS
IDVNSGRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEK
KLKECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVAL
HVLRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYEARFGVAIIIDADGSVGAQ
HFAIDRGEPVENPVKIESLFNFAAIPEDEDDDIVIEADEDEDEELEEKAAATERPAAARS
EGEGEGNRKRKRRRRRRGRNGNAEQPIAAGETIDEDEDGEDEGSEGDENAAAAPETRAEN
EESQRRKRRRRGKRGGRRNRAEDGSEITAEEAGEDNGDTSEGEGEEITNDIAPSEAETVE
TIAEQAGEGQAAMAAVEGAAVVTEDVKPARGRGRRKPAAPPVEEPVTEAGAVPAVEAEPE
VVEASADLATPAQEEAKPVRANRESNISSSEPTVKSTRTENGESDEGKPKKAGWWQRRGF
F
NT seq 2886 nt   +upstreamnt  +downstreamnt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaatcgcatagaagaatttgacttcgagtcgcagcacaagaagcagatccgcggc
aacatctatcttgcaaaggtaacgagggtcgagccctcgctccaggccgctttcgtcgat
tacggcggcaaccgacacggcttcctggccttcgccgaaatccatcctgattattaccag
attccgctcgccgaccgtcaggcgctgcttcgggccgaggccgaagagcaccgtcgcgac
gaagacgttgagcacgtcgaaaccgcgccgatggtcgacctttcgacccaggaccagccg
gatgtcggcatcgtgtcggcggaggcgcctgagccggttgtcgcagccgacgaggcaacc
accgaggagattgctgcagcgccggagatcgtagctccgcccgcggtcgccgaagaagcc
ccggccaagaaggccaaaccacgccgcagtcgcaagaaggtcgccgaaacaaccgcgacg
gaagacgccgttccgacagacgtcgaagcggaaggtgcttcgaccgtcgacaacgacgat
gacacccctgcgggcggcacgatggccgcgatggtggaaaccgacacgatctccgaggac
atcgacaccagcaagcgtcgccacgatgacgacgatgacgatgatgaccacggcgaagag
gaagtcatcgaatccgttggcgccgaagacgcaatggaagaagtgccggaccgcgtgcag
cgcaagccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctg
gttcaggtcgccaaggaggagcgcggcaacaagggtgccgctctcaccacctacctctcg
cttgcaggccgctattcggttctgatgccgaacacggcgcgcggcggcggcatttcccgc
aagatcaccaatccgcaggaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaagtg
ccgcaaggcatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaaggtcgaggtc
aagcgcgatttcgaatatctgatgcgcctgtgggaaaacgtccgcacgctgacgctggcg
tcgaccgccccctgcctcgtctatgaagagggctcgctgatcaagcgctcgatccgcgac
ctctacaacaaggacatcggcgagatcatagttgccggcgaggaaggctatcgtgaagcg
aaagacttcatgaagatgctgatgccgagccatgccaaggtggttcagccctaccgcgac
atccacccgatcttctcgcgctccggcatcgaagcccagctcgaccgcatgctgcagccg
caggtgacgctgcgttccggcggctacctgatcatgaaccagacggaagcgctggtttcg
atcgacgtcaactccggccgctcgacgcgcgaacactcgatcgaggacaccgcgctgcag
acgaacctcgaggccgcggaagaaatcgcccgccagcttcgcctgcgcgacctcgccggc
ctgatcgtcatcgacttcatcgacatggaagagaagcgcaacaaccgcgccgtcgagaag
aagctgaaggagtgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgcat
ttcggcctgctcgaaatgtcgcgtcagcgcattcgcgcttcggttctcgaatcgacgacc
caagtgtgctcgcattgcggcggtaccggccacgtccgttcacagtcctctgtcgccctg
catgtgctccgtggcatcgaggaatatctgctcaagaacacgacgcacaacatcaccgtg
cgcaccacgcccgatatcgcgctctacctgctcaaccacaaacgtcagacgatcgtcgat
tacgaagcgcgctttggcgtagcgatcatcatcgatgccgacggttcggtcggcgcgcag
cactttgcgatcgaccgcggcgagcccgtcgaaaacccagtcaagatcgaaagcctcttc
aacttcgcagccatccccgaggatgaggacgatgacatcgttatcgaggctgatgaggac
gaagacgaagaactcgaggaaaaggctgccgcgaccgaacgtcccgctgcggcgcgttcg
gaaggcgaaggtgaaggcaaccgtaagcgcaagcgtcgccgccgccgtcgtggccgcaac
ggcaatgccgagcagccgatagccgcgggcgagaccatcgacgaagacgaggatggagag
gatgaaggcagcgaaggcgatgaaaacgctgcagcagcgcctgagacccgcgctgagaac
gaggaatcgcagcgtcgcaagcgtcgccgccgtggcaagcgcggcggccgccgcaatcgt
gccgaggacggctcggaaataactgccgaggaagccggtgaagacaacggcgacacgagt
gaaggcgaaggcgaagaaatcacaaacgacatcgctcccagtgaagccgaaaccgtcgag
acgattgccgagcaggctggcgaaggccaggccgccatggccgcggttgaaggtgcagcc
gtcgtcaccgaggatgtgaagccggctcgcggccgcggccgccgcaaacctgccgcaccg
ccggtcgaggagccggtgacagaggcaggggcggtacccgccgtcgaggccgaaccggag
gtggtcgaagcctccgccgatctcgcaacgcccgcccaggaagaagcaaagccggttcgc
gcgaaccgcgaatccaatatttcttcctcagagccgacggtgaaatccacccgtaccgaa
aatggcgaaagcgacgaaggcaagccgaagaaagccggctggtggcagcgccgtggcttc
ttttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system