KEGG   Prescottella equi: REQ_10780
Entry
REQ_10780         CDS       T01352                                 
Name
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
req  Prescottella equi
Pathway
req03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:req00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    REQ_10780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:req03400]
    REQ_10780
Enzymes [BR:req01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     REQ_10780
DNA repair and recombination proteins [BR:req03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     REQ_10780
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: CBH47178
UniProt: A0A3S5Y3R3
Position
1130562..1132802
AA seq 746 aa
MPTRTIDGRRVAVSRLDKVLYPATANGPAVTKGEVIDYYEAIAPAMLPHVVDRPVTRKRW
PNGVDEPSFFEKNLAASAPDWLTRHAVHHKDRAVRYPVIDSAAALVWIGQQAALEVHVPQ
WRFVDGEPGPATRLVFDLDPGDGVGLAECARVAAAVRDLVASLGWTAYPVTSGSKGIHVY
VPLDRTLAPGGASTVARKVATSLEQLHPDLVTATMAKSVRAGRVFVDWSQNNAAKTTIAP
YSLRGRAAPTVAAPRTWDELEDPGLRHLRFDEVLDRFRRDGDLIADLDPRMDALTEYRRK
RDADRTPEPIPQTAAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGLPTSSKE
NRLAVHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPEKWRDDEVIVRLSGQRAQG
RYALIRTEGDQWLMHLMKDDGGATDLPRGLAPMLATAGTLDGLEPEQWAFEGKWDGIRLI
VEFDGTTVRLRGRAGNDVTERYPALQALAAALDGHRVVLDGEVVSLDSHGNTSFPALQAG
GVPQFRAFDILYLDGVSLLRKRYDDRRRILDALAAATVGLDVPPQLTGSVADVRAQSKDL
EGVVAKRRDSIYLPGRRGTAWIKTKNWLTQEVVIGGWRRGRGAREAGIGSLLLGVPDKAG
LRYVGRVGTGFSERERERLIELLGPLERESSPFAGEVPDVDRDTVWVTPSVVGEVRYRER
TDAGRLRHPAWRGLRDDKSPDDVRIE
NT seq 2241 nt   +upstreamnt  +downstreamnt
atgccgacgcgcaccatcgacggacgacgggtggcggtgagccgcctcgacaaggtgctc
tatccggccaccgcgaacggccccgcagtgaccaagggcgaggtgatcgactactacgag
gccatcgcaccggcgatgctgccgcacgtcgtggatcgtccggtgacccgcaagcgctgg
ccgaacggggtcgacgagccgtcgttcttcgagaagaacctcgctgcgtccgcaccggac
tggctcacccgtcacgcggtccatcacaaggaccgggcggtgcggtacccggtgatcgat
tccgctgcggccctggtgtggatcggccagcaggcggcgctcgaggtccacgttccgcag
tggcgcttcgtcgacggcgagccggggcctgcgacgcggctggtgttcgatctcgatccc
ggtgacggtgtggggctcgcggagtgcgcgcgggtcgccgccgcggtgcgggacctggtg
gcgagcctgggctggacggcgtacccggtcaccagtggcagcaaagggattcacgtgtac
gtgccgttggaccggacccttgcgccgggcggggcctccactgtcgcgcggaaggtcgcg
accagcttggaacagttgcaccccgatttggtgacggcgacgatggcgaaatcggtgcgg
gcgggccgcgtcttcgtggactggagccagaacaacgcggcgaagaccaccattgcgccg
tactcgttgcgcggccgggcggcacccaccgtggcggcgccgcggacctgggacgaactc
gaggatcccggcctgcggcatctgcggttcgacgaggtcctcgaccggttccggcgggac
ggcgacctcatcgccgacctcgatccgcggatggatgccctcaccgagtaccgccgcaag
cgcgacgccgaccgtacgcccgaaccgatcccgcagaccgcggccgaaggcggcgagggc
aattcgttcgtgatccaggagcaccacgcccgacgcctgcactacgacttccgtctcgaa
cgtgacggagtgatggtgtcgtgggcggtaccccgcgggctgccgacgtcgtcgaaggag
aaccgtctggccgttcacaccgaggaccacccgctcgagtacgcaagcttcgcgggatcg
attcccaagggcgagtacggcggcggcaccgtgagcatctgggacgcggggacgtacgag
ccggagaaatggcgcgacgacgaggtgatcgtgcgactgtccgggcagcgggcccagggg
cgatacgcgctcatccgcaccgagggcgaccagtggctgatgcacttgatgaaggatgac
ggtggtgcaaccgatctgccccgcgggctcgccccgatgctcgccaccgccggcacgctc
gacgggctcgaacccgagcagtgggcgttcgagggaaagtgggacggcatccgactgatc
gtcgaattcgacggcacgacggtgcggttgcgagggcgggcgggaaacgatgtgaccgaa
cgctatccggcgttgcaggcgctcgcggcggctctcgacgggcatcgagtggtgctcgac
ggcgaggtggtgagcctggactcgcacggcaacaccagttttcccgcgctgcaggccggc
ggcgtcccccagttccgggccttcgacatcctgtacctcgacggggtctcgctgctccgc
aagcgctacgacgaccgccgacggatcctcgacgcgctggccgcggccacggtgggcctc
gacgtgccgccgcagttgacgggcagcgtcgcggacgtgcgcgcgcagagcaaggacctc
gagggcgtcgtcgcgaagcgtcgcgactcgatctacctgccgggtcgccgcgggacggcg
tggatcaagacgaagaactggctcacgcaggaagtggtgatcgggggatggcggcggggc
cgcggtgcccgcgaggcaggcatcgggtcgctactgctgggtgttcccgacaaggccggg
ctgcggtacgtcggacgggtcgggaccgggttcagcgaacgggagcgcgaacggctgatc
gagttgctcggacccctcgaacgcgaatcgagccccttcgccggcgaggtacccgacgtc
gaccgggataccgtgtgggtgacgccgagcgtcgtcggtgaggtgcggtaccgggaacgc
accgacgccgggcgcctgcggcacccggcgtggcgcgggctgcgggacgacaagtctccc
gacgacgttcgcatcgaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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