KEGG T00881: RER

Rhodococcus erythropolis PR4: RER_42220

Entry

RER_42220         CDS       T00881

Name

(GenBank) putative pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

rer Rhodococcus erythropolis PR4

Brite

KEGG Orthology (KO) [BR:rer00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rer03009]
    RER_42220
   03016 Transfer RNA biogenesis [BR:rer03016]
    RER_42220
Enzymes [BR:rer01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     RER_42220
    5.4.99.29  23S rRNA pseudouridine746 synthase
     RER_42220
Ribosome biogenesis [BR:rer03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    RER_42220
Transfer RNA biogenesis [BR:rer03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    RER_42220

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

BAH34930

NITE:

RER_42220

UniProt:

C1A2U5

Position

4634746..4635828

AA seq 360 aa
MITCVSMSPPLPVKNGVGPTRLRIPPSGPWATIAEYVVAKFDHLDAENLYRRFDDGEFVG
IDGQSICRSTELSAHRFVWYYRELPAEDPVPFHEEILHLDDDLVVIDKPHFLPTTPSGRY
LRESALVRLRVRLDNPDLTPIHRLDRGTAGVVMFSARPATRGAYQSLFEKRQVTKVYEAV
SARPSRWDQDAPALDVPLVYRNHIEARRGELRVVVDDSREPNSETTIEARGTGVSASGRA
VLHTVLRPQSGRMHQLRVHLAALGAGILGDRRYPDLLPDAPDDHSLPLQLLARELEFTDP
LSGRARRFVTRRTLSEMPVPDCRAPACRRCPQSPQEGTRSASELDVASETMTEARPAYLS

NT seq 1083 nt +upstreamnt +downstreamnt
atgattacctgtgtgtccatgtccccaccgctgcccgtcaagaacggagttggcccgacg
cgcctacgcatcccaccgtccgggccgtgggcgacgatcgccgagtacgtcgtggcgaag
ttcgaccatctggacgccgaaaacctgtatcggcggttcgacgacggcgagttcgtgggt
atcgacggccagtcgatctgccggagcaccgagctcagcgcgcaccggttcgtctggtac
taccgcgagttaccggcggaggacccggtgccgttccacgaagagatcctgcacctcgac
gacgatctcgtcgtgatcgacaaaccacattttctcccgaccacccccagcgggcgctac
ctgcgcgagtcggcgctcgtccgactgcgggtccgcctcgacaacccagatctgaccccg
atccacagactcgaccgcggcaccgcaggggtggtgatgttctcggcccgccccgcgacg
cgcggcgcgtaccagtcactgttcgagaagcggcaggtcacgaaggtctacgaggcggtg
tcggcgcgaccgtcccggtgggaccaggatgcgccagcgctcgacgtccctctcgtttac
cgcaaccacatcgaagctcgacgcggcgagttgcgggtcgtcgtcgacgacagccgtgaa
cccaactccgagaccacgatcgaggcacgagggacgggcgtgagcgcctccggacgtgct
gtgctgcacacggttctacgtccgcagtccggacggatgcaccagttgcgggtgcatctg
gcagctctcggcgccgggatcctgggcgaccggcgataccccgacctgcttcccgacgcc
ccggacgatcattccctcccactccaattgctcgcgcgggaactcgaattcaccgacccg
ttgtcggggagagcgcggcggtttgtcactcgtcggacgctcagtgagatgcccgtgcct
gactgccgagcacccgcctgccgtcggtgtcctcagtcacctcaagaagggacacggtct
gcctcagaactcgacgtcgccagcgagactatgaccgaagcccgccctgcgtatctgagc
tga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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