KEGG   Rhizobium etli CFN 42: RHE_CH01637
Entry
RHE_CH01637       CDS       T00317                                 
Symbol
rnr
Name
(GenBank) exoribonuclease protein
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ret  Rhizobium etli CFN 42
Pathway
ret03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ret00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHE_CH01637 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ret03019]
    RHE_CH01637 (rnr)
   03016 Transfer RNA biogenesis [BR:ret03016]
    RHE_CH01637 (rnr)
Enzymes [BR:ret01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     RHE_CH01637 (rnr)
Messenger RNA biogenesis [BR:ret03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RHE_CH01637 (rnr)
Transfer RNA biogenesis [BR:ret03016]
 Prokaryotic type
  tRNA degradation factors
   RHE_CH01637 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 FaeA HTH_IclR
Other DBs
NCBI-ProteinID: ABC90436
RhizoBase: RHE_CH01637
UniProt: Q2K9Q0
Position
complement(1720806..1723175)
AA seq 789 aa
MSRTPRDRTNLAGKRPGKIGRAGRDVSAVEPLNIVHGTLPSREVILRFIADHPQKASKRE
LAKAFGLKGDSRVELKHMLQELEQEGMLQKSRKSLIRPGALPPVTVLDITTRDKDGDLIG
RPAEWPEEQGVAPAVAIRQQSPAGRQKGKAPVAGLGDRILAKIFPAVDRGGPAYTARIIK
VIDRRRGAAMGVFRSAPGGGGRLLPIERRGEEMVIDPDYTGGAEDGDLVEIEVARLGRFG
LPRAKVLSVVGSVGSEKAISTIAIHAHGIPHVFPPAVIAEAEAAKPATMSHREDWRDVPL
ITIDPADAKDHDDAVYAELDPSPDNPGGVIVTVAIADVSWYIRPNSPLDREALKRGNSVY
FPDRVVPMLPERISNDLCSLKEGVDRPALAVRMSFSGEGRKIGHTFHRIMMKSAGKLSYQ
QAQAAIDGRPDDKTGPMLETILKPLWHAYGVMKRGRDRRQPLELDMPERKILLKPDGTVD
RVFVPPRLDAHKLIEEMMIQANVCAAETLEKKRQPLVYRIHDGPTLAKQEVLREFLATLG
ISLAKGGNVRANSFNGILAKAEGTAHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAH
FTSPIRRYADLIVHRALVGSLGLGEGGITPDEEASLDDIAAEISTFERRAMAAERETIDR
LIAHHLSTRVGEEFAGRVSGVTKSGLFITLPDYGADGFVPISTLGTDYFIYDEAHQALSG
EKTGLGYRLGDSVTVKLAEAIPLAGALRFEMLSEGREMPTAVRSFHKAGRRDRDQVRKKP
GTRPPRGRR
NT seq 2370 nt   +upstreamnt  +downstreamnt
gtgagcaggacaccgcgcgataggacgaacctcgcgggcaagcgcccgggcaagatcggc
cgcgccggcagggatgtttccgccgtcgaaccgctgaacatcgtccacggcacgctgcca
tcgcgcgaggtgattctgcgtttcattgccgatcatccgcagaaggcttccaagcgtgaa
ctcgccaaggcgttcggcctgaaaggcgacagccgcgtcgagctcaagcacatgctgcag
gagctcgaacaagaaggcatgctgcaaaagagtcgcaagtcgctcattcgtcctggcgct
cttccgcccgtcaccgttctcgacatcacgacgcgtgataaggacggtgacctgatcggc
cggccggcggaatggccggaggagcagggtgtggcaccggccgtcgccatccgtcagcaa
tcgcccgcaggccgccagaaaggcaaagcgcccgtcgccggcctcggcgaccgtatcctg
gcgaagatcttcccggccgtcgatcgcggcgggccagcttatacggcgcgtatcatcaag
gtgatcgataggcgccgcggtgcggcgatgggcgtcttccgcagcgcgcccggcggcggc
ggccggctgctgccgatcgaacgacgcggcgaagagatggtaatcgatcccgactatacc
ggcggcgccgaggacggcgacctggtcgagatcgaagtcgcgcgcctcggacgtttcggc
ctgccgcgtgccaaggtcctctccgtcgtgggctcggtcggctccgaaaaggcgatctca
acgatcgcgatccatgcgcacggcatcccgcacgtcttcccaccggccgtgatcgccgag
gcggaagctgccaaacccgccacgatgtcgcatcgggaggattggcgcgacgtgccgctg
atcaccatcgacccggccgacgccaaggaccacgatgacgcagtttacgccgaactcgac
ccctcgcccgacaatcccggcggcgtcatcgtcactgtcgcgatcgccgacgtctcctgg
tatatccgccccaattccccgctcgaccgcgaagcgctgaagcgcggcaactcggtctat
ttccctgatcgcgtcgtgccgatgctgccggagcgcatctccaacgatctctgctcgctg
aaggaaggtgtcgaccgcccagcgctcgccgtgcgcatgagcttctcaggcgaaggccgc
aagatcggccatacgtttcatcgcatcatgatgaagagtgccggcaagctctcttatcag
caggcacaggcggcgatcgacggaaggccggatgacaagaccggaccgatgctcgagacg
atcctgaaaccgctctggcacgcctatggagtaatgaagcgcggacgcgaccggcgccaa
ccactggaactcgacatgccggagcggaagatcttgctgaagccagacggcaccgtcgac
cgggtcttcgtgccgccgcggctcgatgcgcacaagctgatcgaagagatgatgattcag
gcgaatgtctgcgccgccgaaacgcttgaaaagaagcgtcagccattggtctaccgcatc
catgacggcccgacccttgccaagcaggaagtcttgcgcgaattcctggcgacactcggc
atctcgcttgccaagggcggcaatgtgcgcgccaacagcttcaacggcattctcgcaaaa
gccgaaggcacggcgcatcagaccatggtcaacgaaatggtgctgcgctcgcagagccag
gcaatctacagtccggagaatatcggtcacttcggcctcaatctgatgaaatacgcccac
ttcacatcgccgatccgccgctacgccgatctcatcgtgcatcgcgcgctcgtcggttcg
ctcggcctcggcgaaggcggcatcacgcccgacgaagaagcctcactcgacgatatcgcc
gccgagatctcgaccttcgagcgccgggcgatggcggccgagcgcgagaccatcgaccgg
ctgatcgcccatcatttgagcacccgcgtcggcgaggagttcgccggccgcgtctccgga
gttaccaaatccgggctgtttatcaccttgccggattatggcgccgacggtttcgtccct
atatctacactcggtaccgattatttcatctatgacgaggcgcatcaggcgctctcgggt
gaaaagacgggcctcggctatcgtcttggcgacagcgtcaccgtgaagcttgcggaagca
atcccgcttgctggcgcgctgcgtttcgagatgctgagcgaaggacgcgagatgccgacg
gcggtgcgttccttccataaggccggccgccgcgacagggaccaggtccgcaagaaaccg
ggaacgcgtcccccgcgcggacgccgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (37)   

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