KEGG   Rhodococcus fascians D188: A3L23_03496
Entry
A3L23_03496       CDS       T04328                                 
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
rfa  Rhodococcus fascians D188
Pathway
rfa03030  DNA replication
rfa03430  Mismatch repair
rfa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3L23_03496 (dnaQ)
   03430 Mismatch repair
    A3L23_03496 (dnaQ)
   03440 Homologous recombination
    A3L23_03496 (dnaQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rfa03032]
    A3L23_03496 (dnaQ)
   03400 DNA repair and recombination proteins [BR:rfa03400]
    A3L23_03496 (dnaQ)
Enzymes [BR:rfa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A3L23_03496 (dnaQ)
DNA replication proteins [BR:rfa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     A3L23_03496 (dnaQ)
DNA repair and recombination proteins [BR:rfa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     A3L23_03496 (dnaQ)
SSDB
Motif
Pfam: TerD RNase_T BRCT Rv2179c-like DNA_pol_A_exo1 PTCB-BRCT
Other DBs
NCBI-ProteinID: AMY54821
UniProt: A0A165MF23
Position
3641842..3643587
AA seq 581 aa
MKNSVRTGSDKWVVVDVETSGLKASRDRVLSVAALTVDEDGRVGRELSTLVNPGCDPGPV
HIHKLTPERLAGAPTFDMIAPQLMDLLDGRTLVAHNASFDHGFLKLESMRAGIDMPTKQR
LCTVALSRRLQLDTPNHKLSTLAAHWKVLQSNAHDAYDDAQVLAQVFTHSARLARSLELP
LPVVTCTERLTLYPDTVPRTHCAWENPGPLAEDGGLVQGMRVVISGDTRIPRLRLAAQLT
EAGLDVMNSVSRFTSVVVCSDPTTESGKVERARAHGLRIISESELLDLLRNVQPGTPKGI
RPRTQPKPAEQQPDPVVKPWQTRRVLVMGGSHAESVLMRSRLIQLGATPAVNLSAGVTDI
LILDGGDGDPRMPKVKERDLTLLTPAAIDRELNIEVPAPLPARPSRIAPLVPRGGVVDLD
PDQAVLTVNSSWRADDSDRVGVDVVAFLLSDDELVASDEDFVFYNAPVTSDGAVSMSIDG
DSEQGVRIDLSLVPEDCVRITVAAAIDGDHTFGDLGAVSVSLDGLDSAVATAVLDAATTE
RSMLLAEIYRRGSGWRFRPIGQGYDDGLAELAVRFGVEVDG
NT seq 1746 nt   +upstreamnt  +downstreamnt
gtgaagaattcggttagaaccggcagcgacaaatgggtcgtcgtcgatgtcgagacctcg
ggtctgaaggcatcccgtgatcgagtgctcagtgtggccgctctgacggtcgacgaggac
ggacgtgtcggacgcgaactgtcgactctggtcaacccgggttgcgatcctggcccggtg
cacattcacaaactgacgcccgaacggcttgccggtgcgccgacgttcgacatgatcgct
ccgcaactcatggatctgctggatggtcgaaccttggtcgcgcacaacgcgagtttcgat
cacgggttcttgaagctcgaatcgatgcgtgcgggcatcgacatgccgacgaagcaacgg
ttgtgcaccgtggcattgtcgaggcgactacaactcgatactcccaaccacaagctgtcc
accctggccgcgcactggaaagtgctgcagtccaatgcgcacgacgcctacgacgatgcc
caagtgctggcgcaggtgttcacccacagcgctcggctggccaggtcgctcgaacttccc
cttccagtcgtcacgtgcaccgagcgtctgacgctgtatccggataccgttcctcgcaca
cattgcgcgtgggagaacccaggtccacttgccgaggacggcggtctcgttcagggcatg
cgagtcgtgatcagcggcgacacgcgaatcccgcgattgcgcttggccgctcagctcacg
gaagccggactggacgtgatgaattccgtcagtcgattcacgagtgtggtggtgtgttcg
gatcccacaacggaaagcggaaaagtcgaaagggcgcgcgcccatggccttcgcatcatc
tcggagtcggaattgctcgacttgctccggaatgtgcagccaggaacgccgaaaggtatt
cggccgcggacccagccgaaaccagccgagcagcagcccgatccagtcgtcaagccctgg
cagacaagaagggtcttggtcatgggcggttcgcacgccgagtcggtactcatgcggtcg
cgcctgatccaactcggtgcgacaccggctgtgaatctcagcgccggcgtgaccgacatc
ctgatcttggacggcggcgatggagacccgcggatgccgaaagtgaaggaacgggatctc
acgttgctgacaccggcagcgatcgaccgagaactgaatatcgaagttcccgcgccgctc
cctgctcggccgtcccgaatcgctccgttggtgccacggggtggcgtcgtcgacctcgac
cctgatcaggcagtgctgacggtcaacagttcctggcgtgccgacgactccgatcgggtc
ggtgtagatgtagtcgcgttcttgctgtccgacgatgaattggtcgccagtgacgaggat
ttcgtgttctacaacgctccggtcacctcggacggtgccgtctcgatgtcgatcgatggt
gacagcgaacagggtgtgcggatcgacctttcactcgttcccgaggattgcgtgcgtatc
accgtcgccgcagcaatcgacggtgaccacacattcggtgacctaggcgcggtatcggtg
tcgctcgatggactcgattcggcggtcgcgacagcggtgctggatgccgcgaccacggaa
cgatcgatgctgctcgcagagatctaccgccgcgggagtggctggcgcttccggccgatc
ggtcagggctacgacgacggattggcagaattggcggtgcggttcggcgtggaggtcgat
gggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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