KEGG   Rhizobium gallicum bv. gallicum: RGR602_CH01572
Entry
RGR602_CH01572    CDS       T03539                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rga  Rhizobium gallicum bv. gallicum
Pathway
rga03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RGR602_CH01572 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rga03021]
    RGR602_CH01572 (rpoC)
   03400 DNA repair and recombination proteins [BR:rga03400]
    RGR602_CH01572 (rpoC)
Enzymes [BR:rga01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RGR602_CH01572 (rpoC)
Transcription machinery [BR:rga03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RGR602_CH01572 (rpoC)
DNA repair and recombination proteins [BR:rga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RGR602_CH01572 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid RnfC_N Apocytochr_F_C
Other DBs
NCBI-ProteinID: AJD40916
UniProt: A0A0B4X143
Position
1571414..1575625
AA seq 1403 aa
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSISEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAIEFDEKTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDNIDHPVTGERIVDAGKMILEPDVVEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
LLRNSEGILVAMGRNMTVQILDERGVERSSQRVAYGSKLYVDEGDKVKRGQRLAEWDPYT
RPIMTELAGTVQFEDVVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDGLIEQGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTAIRRIATSRDEMILEERRK
GTGADAATPMLQDMAGENASAAE
NT seq 4212 nt   +upstreamnt  +downstreamnt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgactcc
atccggatttcgattgcctctccggagaagatcctttcctggtcctacggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgatggtctcttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcctttgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcggcgc
gagcgcatgggccatatcgagcttgcagcacccgttgcccacatctggttcctgaagtcg
ctgccgagccgcatttccacgttgctcgacatgacgctgaaggatgtcgagcgcgtcctg
tatttcgaaaactacatcgtcaccgagccgggcctcacggcccttaaggaacatcagctc
ctctcggaagaagagtacatgctcgccgtcgacgaatatggcgaagaccagttcacggcg
atgatcggcgctgaagccatctacgagatgctggcatcgatgaacctcgagaagatcgcc
ggcgatctgcgttccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggaatccggcaaccgtccggaatggatgatc
atgaaggtcgttccggtgatcccgccggatctgcgtccgctggttccgctcgatggcggc
cgctttgccacgtcggacctgaacgatctctatcggcgcgtcatcaaccgtaacaatcgt
ctgaagcgcctgatcgagcttcgtgcgccgggtatcattatccgcaacgaaaagcgcatg
ttgcaggaatccgtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgttgactattccggccgctcggtcatcgtgaccggt
ccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactcttcaag
ccgttcatctacgcgcgcctcgacgccaagggttattcctcgaccgtcaagcaggcgaaa
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcttgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcatccgctcgtttgcacggccttcaac
gccgacttcgatggtgaccagatggccgtccacgtgccactgtctctcgaagcccagctc
gaagcccgcgttctgatgatgtcgacgaacaacatcctgcacccggccaacggcgcaccg
atcatcgttccgtcgcaggacatggttctcggcctctactacctctcgatcatgaaccag
aacgagccgggcgaaggcatggccttctccgacctcggcgaactgcatcatgctcttgaa
agcaaggtcgtcacgctgcacaccaagatccgtggccgcttcaagtcgatcagcgaggac
ggcaagccgtactccaagatctatgaaacgaccccgggccgcctgctcatcggcgaattg
ctgccgaagaacggcaaggtgcctttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtcattttc
tgcgaccgcatcatgcagctcggcttctcgcatgcctgccgcgccggcatctcgttcggc
aaggacgacatggtgatcccggataccaaggttaagatcgtcggcgataccgaagcactc
gtgaaggaatacgagcagcagtacaacgacggcctcatcacgcagggcgaaaagtacaac
aaggtcgtcgatgcctggggcaaggccaccgagaaggtcgccgaagagatgatggcccgc
atcaaggctatcgagttcgacgaaaagaccggccgccagaagcctatgaactcgatctac
atgatgagccactcgggcgcccgcggttcgccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggctaagccgtcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacgcacggcgcccgtaagggactg
gcagacaccgccttgaagacggcaaactcgggctacctgacccgccgtctcgtcgacgtc
gcgcaggattgcatcgtcaactccgtggattgcggcaccgacaagggcctcaccatgact
gcgatcgtcgatgccggccaggtcgttgcctcgctcggcgcacgtatcctcggccgtacg
gcactcgacaacatcgatcacccggtcaccggcgagcgcatcgtcgatgccggcaagatg
atcctcgagccagatgtcgtcgagatcgaaaaagctggtatccagtcgatccgcatccgt
tcggcactgacctgcgaaatccagacaggcgtctgctctgtctgctacggccgcgacctt
gctcgcggtacgccggtcaacatgggcgaagcggtcggcgtcatcgcggctcagtcgatc
ggcgagccaggcacgcagctcaccatgcgtaccttccaccttggcggtacggccaccgtg
gtcgaccagtcgttcctggaggcctcgtatgaaggaacggttcagatcaagaaccgcaac
cttctgcggaactccgaaggcatcctcgttgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggcgttgagcgctcctcgcagcgcgttgcctacggttctaagctgtat
gtggacgagggcgacaaggtaaagcgcggccagcgtctggctgagtgggatccgtacacc
cgtccgataatgacggaactggccggtaccgttcagttcgaagacgttgtcgacggtctc
tccgtcctcgaagcgaccgacgaatccacggggatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgtggttcggacctcaagccggcaattgtcatcaaggacgcaagcggc
aatgtcgcgaagctgtctcgcggcggcgatgcccgcttcctgctttcggtcgacgcgatc
ctttcggtcgagccaggccagaaggtctcccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgcgttgccgaactcttcgaa
gcccgccgcccgaaggatcatgccatcatcgctgagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgccgcgtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggcgactacatcctcgacggcaacccggcaccgcatgacatcctggcgatcaagggc
gtggaggctctggcttcctacctcgtcaacgagatccaggaagtctaccgcttgcagggc
gttgtcatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaaggtggaa
atcaccgatgctggcgactcgacttatatcgtcggcgacaacgtcgaccgtatcgagctc
gaggacgtcaacgacggcctgatcgagcagggcaagaagcctgcctatggcgagccggtt
cttctgggcatcaccaaggcgtcgctgcagaccccgtccttcatctccgccgcttccttc
caggaaacgacgaaggtgctgacggaagctgcgatcgccggcaagaccgacggcctgcag
ggtctcaaggaaaacgtcatcgtcggacgcctcatcccggccggtaccggcggcaccatg
acggcgatccgccgtatcgcgacgtcgcgcgatgagatgatcctcgaagagcgtcgcaag
ggcacgggcgcggatgccgcaaccccgatgctccaggacatggccggcgaaaacgcttcg
gctgccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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