KEGG   Rhodococcus jostii: RHA1_ro01069
Entry
RHA1_ro01069      CDS       T00382                                 
Symbol
dnaE1
Name
(GenBank) DNA-directed DNA polymerase III alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rha  Rhodococcus jostii
Pathway
rha03030  DNA replication
rha03430  Mismatch repair
rha03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RHA1_ro01069 (dnaE1)
   03430 Mismatch repair
    RHA1_ro01069 (dnaE1)
   03440 Homologous recombination
    RHA1_ro01069 (dnaE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rha03032]
    RHA1_ro01069 (dnaE1)
   03400 DNA repair and recombination proteins [BR:rha03400]
    RHA1_ro01069 (dnaE1)
Enzymes [BR:rha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RHA1_ro01069 (dnaE1)
DNA replication proteins [BR:rha03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RHA1_ro01069 (dnaE1)
DNA repair and recombination proteins [BR:rha03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RHA1_ro01069 (dnaE1)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ABG92896
UniProt: Q0SHU0
Position
complement(1134560..1138096)
AA seq 1178 aa
MADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQG
IKPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR
MPIFPVPEGETQGTWLRKEVMRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHAC
AVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVLPPDVNE
SEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESISSVFNV
KIPDEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTEDSVVLVKARVSI
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKLGALRQVLTRHPGTSDVHVRL
IGGTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCLSV
NT seq 3537 nt   +upstreamnt  +downstreamnt
gtggctgactcgttcgtacatctgcacaatcacaccgagtactcgatgctcgacggtgcg
gccaaggtcggccccctgttcgaagaggccgagcgactggggatgtcggcggtcggcatg
accgaccacggcaacatgtacggcgccagcgagttctacaacgaggccaagaagcagggc
atcaagccgatcatcggcatcgaggcgtacatcgcgcccgagtcccgcttcaacaccaag
cgcgtgttgtggggcgaccgcagccagaagtccgacgacgtctccggtagcggtgcgtac
acccacatgacgatggtcgcggagaacgcgaccggcctgcggaacctgttcaagctgtcc
tcgctcgcgtccatcgagggtcagctcggcaagtgggcacgaatggacgaagagctcatc
gccacccaccacgagggcatcatcgcgaccacgggctgcccgtccggtgagatccagacc
cggcttcggctcggccacgaccgcgaggcgctcgaggccgccgccaagtggcaggagatc
tggggcaaggacaacttcttcctcgagctgatggaccacggactgtcgatcgagcgacgg
gtgcgcgagggcctgctcgagatcagcaagaagctcgagattccgccgctcgccaccaac
gactgccactacgtcaccaaggaagccgcggagaaccacgaggccctcctctgcatccag
accggtaagacgctgtccgaccccacccggttcaagttcgacggcgacggctattacctg
aagccggccgcggagatgcgggcgctgtgggacgaccaggtgcccggagcgtgcgacaac
acactgctgatcgccgagcgggtccagtcgtacgacgacgtgtgggcgcaccacgaccgg
atgccgatcttcccggtccccgagggcgagacgcagggcacctggctgcgcaaggaggtc
atgcgcggactggaccgccggttccccgacggtccgcccgaggagtacctcgcccgcgcc
gactacgagatcggcgtcatcctcgaaatgggtttccccgcctacttcctcgtcgtcggc
gacctcatcaaccacgcccgggaggtcggcatccgcgtcggccccggccgaggctcggcg
gccggttcgctcgtcgcctacgcgatgggcatcaccaacatcgaccccatcccgcacggc
ctgctgttcgagcggttcctgaaccccgagcgcgtctcgatgcccgatatcgatatcgac
ttcgacgatcgccgtcgcggcgagatggtgcgctacgcgacggacaagtggggcagcgac
cgcgtcgcccaggtcatcacgttcggcaccatcaagacgaaggcggccatcaaggactcc
gcccgagtccagttcggtcagcccggtttcgcgatcgccgaccagatcacgaaggcgttg
ccgccgccgatcatggccaaggacatctcggtgtccggcatcaccgacccgaaccacgag
cgctacaaggaagcggtggaggttcgcgccctcatcgactccaacccggacgtcgcgaag
atctaccagacggccaagggactcgagggcctgatccgtaacgccggcgtccacgcctgc
gcggtgatcatgtcgtccgaaccgctgatggacgcgattcccgtgtggaagcgcgcccag
gacggcgccatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggactgcggaacctcaccgtcatcggtgacgccatcgacaacatcaag
gccaaccgggggatcgacctcgatctcgacaccctcgcgctcgacgatcaagccacgtac
gaactgctctcccgcggagacactctcggtgtgttccagctcgacggcagcgcgatgcgc
gacctgctgcgccgcatgcagcccaccggcttcgaggacatcgtcgcggtgctcgcgctg
taccggcccggtccgatgggcatgaacgcgcacaacgactacgccgaccgcaagaacggg
cggcaagaggtcaaacccatccacccggagctcgaggagcccctgaaagagatcctggcc
gacacgtacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
gggtactcgctcggacaggccgacattctccgccgagccatgggtaagaaaaagctctcg
gtgctggaggaggcgtacgccggtttccgtgagggcatgctcgccaacgaattctccgag
cccgccatcaaggcgctgtgggacaccatccttccgttcgccgggtacgcgttcaacaag
tcgcacgcggccgggtacggcctggtgtcgttctggaccgggtacctcaaggccaactat
ccggccgagtacatggccggtctgctcacctcggtcggtgacgacaaggacaaggccgcc
gtctacctggcggactgccgcaagatgggtatcaccgtgctgccgccggacgtcaacgaa
tcggaggtcaacttcgcctccgtcggtgaggacatccggttcggcatgggcgcggtccgc
aacgtcggtgccaacgtcgtgggctcgatcatcaaggcgcgcaaggagaagtccaagttc
gtcgacttctccgactacctcaacaagatcgacgccgccgcctgctccaagaaggtcacc
gagtcgctgatcaaggcaggcgggttcgactcgctgggtcatccgcgcaagggactcatg
ctcgtccacgccgacgccatcgacgcggtgatgggtaccaagaaggcggaggcgatcgga
cagttcgacctgttcggtggcgacgacgccgacgagtcgatctcctcggtgttcaacgtg
aagatcccggacgaggagtgggactcgaagcaccggttggcgctggaacgggaaatgctg
ggactgtacgtgtccgggcacccgctcaacggcgtcgaacacgtgctgtcggcgcagtcc
gacaccgcgatcccgaccatcctcgaaggcgacatcaaggacggcacccaggtcaccgtc
ggcggcatcctcgcgtcggtgaaccggaggatcaacaagaacggtctcacctgggcgtcc
gcgcagctcgaggatctgaccggcggtatcgaggtgctgttcttcccgcaggcctactcg
gtctacgggatggatgtcacggaggactccgtcgtgctcgtcaaggcgcgcgtgtcgatt
cgtgacgaccggatctcgctcatcgccaacgaccttgcggtgccggatctctcggcggtg
ggggtcgcgaagccgctggcggtcagtcttccgctgcgtcagtgcaccaaggacaagctc
ggtgcgctgcgtcaggtgctcacgcgccatccgggcacctcggacgtgcacgtgcggttg
atcggcggcaccgaggtcacgttgtggaaggtggacgacgtgctccgggtggaaccgtcg
tcggcgttgatgggtgatctcaaggcgctgctcggaccgagctgcctgtctgtgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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