KEGG T00382: RHA1

Rhodococcus jostii: RHA1_ro06876

Entry

RHA1_ro06876      CDS       T00382

Name

(GenBank) conserved hypothetical protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

rha Rhodococcus jostii

Brite

KEGG Orthology (KO) [BR:rha00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rha03016]
    RHA1_ro06876
Enzymes [BR:rha01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     RHA1_ro06876
Transfer RNA biogenesis [BR:rha03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    RHA1_ro06876
Prokaryotic type
   tRNA splicing ligases
    RHA1_ro06876

SSDB

Motif

Pfam:

RtcB Hexapep

Other DBs

NCBI-ProteinID:

ABG98642

UniProt:

Q0S1E4

Position

7389696..7390901

AA seq 401 aa
MFPVRLEGTTAPTLMWAEEWTIEQAALQQLRNMADLPWVHGVRVMPDVHVGKGATVGSVI
AMREAVAPAAVGVDIGCGMTAVRTDVTANDLPDSLRSMRSRIEHAVPVGFAMHERSVNVG
ALDVRDAGGVKKGWHRFWQEFGDLHSGVQSRESRAMKQIGTLGGGNHFIEVCLSDADEVW
LMLHSGSRNIGKELAERHIAVARALPHNQRLVDRDLAVFLAGSKEMDAYRHDLTWAQEYA
ARNRAVILTLVMQAFRQALPGRPVRFDEPISCHHNYVSEEIIDGEPMLVTRKGAIRAGRG
DLGLIPGSMGTGSYVVRGLGSELSFHSASHGAGRTMSRTKAKKRFTVDDLVRQTSGVESR
KDAGVIDEIPGAYKDIEQVIEAQADLVEVVAHLRQVVCVKG

NT seq 1206 nt +upstreamnt +downstreamnt
atgttccccgtgaggctggaaggcaccaccgcgcccaccttgatgtgggcggaagagtgg
accatcgagcaggcagcgttgcagcagctgcggaacatggccgacctgccgtgggtgcac
ggtgtgcgggtcatgcccgacgtccatgtcggcaagggtgcgacggtcggttccgtcatc
gcgatgcgggaggcggtcgccccggcagcggtcggcgtcgacatcgggtgcgggatgacg
gcggtccggacggatgtgaccgcgaacgatctgcccgacagcctgcgctcgatgcgctcg
cgcatcgagcacgcggtgccggtcgggttcgccatgcacgagcgttcggtgaacgtcggc
gcactggacgtcagggacgccgggggagtgaagaagggatggcaccgcttctggcaggaa
ttcggtgacctgcattccggcgtccagtcccgcgaatccagggcgatgaagcagatcgga
acgctcggcggcggcaaccacttcatcgaggtgtgcctgtcggacgccgacgaggtctgg
ctgatgctccactccggttcacgcaacatcggcaaggagctggcggagcggcacatcgcg
gtggcgcgggcgttgccgcacaaccagcggctggtcgatcgcgatctcgcggtgttcctc
gcaggcagcaaggagatggacgcgtaccgccacgacctgacgtgggcgcaggaatacgcg
gcccgcaaccgtgccgtcatactcacgttggtgatgcaggcattccggcaggctctgccc
ggcaggccggtgcgattcgacgagccgatctcctgccaccacaactatgtgtcggaggag
atcatcgacggcgagccgatgctcgtcacccgcaagggcgcgatccgggccgggcggggt
gatctcggactcatccccggatccatgggcaccggttcctacgtggtgcgtggcctgggc
tccgagttgtccttccattcggcatcgcacggggcgggacggacgatgagccgcacgaag
gcgaagaagcgcttcaccgtcgacgacctcgtgcggcagacgtccggagtcgaatcgcgt
aaggacgcgggcgtgatcgacgagatccccggcgcctacaaggacatcgagcaggtgatc
gaagcgcaggccgacctcgtggaggtcgtggcccacctgcggcaggtcgtctgtgtgaag
ggatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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