KEGG   Rhodococcus jostii: RHA1_ro11122
Entry
RHA1_ro11122      CDS       T00382                                 
Name
(GenBank) probable DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rha  Rhodococcus jostii
Pathway
rha03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHA1_ro11122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rha03400]
    RHA1_ro11122
Enzymes [BR:rha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHA1_ro11122
DNA repair and recombination proteins [BR:rha03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHA1_ro11122
SSDB
Motif
Pfam: DNA_ligase_A_C DNA_ligase_A_M
Other DBs
NCBI-ProteinID: ABH00769
UniProt: Q0RVB7
Position
pRHL3:118431..119267
AA seq 278 aa
MDPQSQRRDRLLEVAEALSTAFGGGGRIVLDGAIVVMDRGRPSFGLLQRRLGVAHATKPL
QRRIPVTYLPFDALVRNGVELLRVPYLDRRAELAELESIVEKIGGLPIAVPPHWESQNGR
VMLNAARSAQMKGIVAKRSNSIYLPGQRNRSWIKTAIRTRGTVLAIGFVGSSRSVAALVL
GGYTADGRLEQVGHVSSGLSVSARRQLREEFRSLERPTSPLPDDPAAAPDGDGDVRWLTP
VTVVEVDFRELTSRGLRHPSYKGRRLDIDPASVRVEDL
NT seq 837 nt   +upstreamnt  +downstreamnt
gtggacccgcaatctcaacgtcgtgaccgcctcctagaggtcgccgaggccctgtcgacg
gcattcggcggcggcggccgcatcgtcctcgacggggcgatcgtggtcatggaccggggc
cgtccgtccttcgggctcttgcagcgcagactcggtgtggcacacgcgacgaagccgctt
cagcggcggatccccgtgacgtatctgccttttgacgcgctcgtccgaaacggcgtggaa
ctcctgcgagtgccttacctggatcggcgggcggagctggccgaactggaatcgatcgtc
gagaagatcggcgggctcccgatcgcagtgccgccgcactgggaatcccagaatggtcgc
gtcatgctgaatgcggcccgttcggcgcagatgaagggaatcgtcgccaagcggtcgaac
tcgatttaccttccggggcaacggaatcgatcgtggatcaagaccgcgatccggacgagg
gggacggtgctcgcgatcgggttcgtcggcagcagccggtcggtggccgcgctggttctc
ggcggctataccgccgacgggcgactcgagcaagtcgggcacgtcagcagcggcctgagc
gtctccgcgcgccgccagctccgggaggagttccgttcgctcgaacgccccaccagcccc
ctcccagacgacccggcagcggccccggacggtgacggcgatgtccgctggctgactccg
gtcacggtggtcgaggtcgatttccgcgagctcacctcgcgtgggctcaggcatccctcg
tacaagggcagacgcctcgatatcgaccccgcatcggtccgggtcgaggacctgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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