KEGG   Rhodanobacter denitrificans: R2APBS1_1026
Entry
R2APBS1_1026      CDS       T02495                                 
Name
(GenBank) DNA-directed DNA polymerase III PolC
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rhd  Rhodanobacter denitrificans
Pathway
rhd03030  DNA replication
rhd03430  Mismatch repair
rhd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    R2APBS1_1026
   03430 Mismatch repair
    R2APBS1_1026
   03440 Homologous recombination
    R2APBS1_1026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhd03032]
    R2APBS1_1026
   03400 DNA repair and recombination proteins [BR:rhd03400]
    R2APBS1_1026
Enzymes [BR:rhd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     R2APBS1_1026
DNA replication proteins [BR:rhd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     R2APBS1_1026
DNA repair and recombination proteins [BR:rhd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     R2APBS1_1026
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C HROB
Other DBs
NCBI-ProteinID: AGG88182
UniProt: M4NE35
Position
complement(1127520..1131113)
AA seq 1197 aa
MPLGKVPGSLRGLTAQERMTVRYTHLHLHSEYSLVDSTIRIKALVAACVRDGIPALALTD
DSNMFALVKFYKACSAAGIKPIGGCDLWMAAPDDPRPWRLTLLCQHRAGYLNLSRLVSRA
WQEGQHGGRALVEAGWLSVDASDGLIALLGRESEVGRLALNQGNEAALAKLRPLAQLFPE
RLYLELTRCGREGEEAWNTAALALAAELGLPVLASNDVRFLTQNDFGAHEARVCIQQGRV
LADPKRPRDYSDQQYLKTPEEMAALFADLPEALENTVELAKRCTLELKFGTYYLPDFPVP
AGHDLDSHIRELARQGLKERLANAPLAADHTLADYQARLERELDVIVKMGFPGYFLIVAD
FINWGKQNGIPVGPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDF
CMDRRDEVIDYVARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGFGYTQVDRIAKLIPAR
PLDLTLSCALGRSEKAKKEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGG
VVIAPSPLTDFAPLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINA
RRAKAGEALLDISALPLDDPASYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIAL
VALYRPGPMDLIPSFVARKHGREDVEYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYS
LGGADLLRRAMGKKKLEEMAKERAKFREGAAKDGLSGEKADSIFDLMEKFAGYGFNKSHA
AAYALVSYQTAWLKAHYPAEFMAATISSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEY
MFVAVEPKVIQYGLGAIKGVGQGACEAIVAERANGRYADLADFCRRVDPTRLNRRVLEAL
ILSGALDALAANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLKIELPTV
PEWPLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSSCPLGEIADRYQPPKPRKNDHDDG
NRFRRGPDTPWTVAGMVTAVRKRGDSDAFVRLEDGSGIIEVSFFGELYQQMAPLLTRDEM
LVVDGGLRIDDFSGGGFQLRARSACSLADACRRHARLLQLKLNGIGPGFVGQLQQALAGY
RGGRTSVTLHGYRNRHAQADLELGEAWRVEAIPELLRTVRALPGVQAARLRIVKQQD
NT seq 3594 nt   +upstreamnt  +downstreamnt
ttgccgctgggcaaggtgccgggtagcctgcggggactcaccgcgcaagaacgcatgacc
gtccgctatacccacctgcacctgcacagcgaatactcgctggtcgattcgaccatccgc
atcaaggcgctggtcgccgcctgcgtgcgcgacggcatcccggcgctggcgctgaccgac
gacagcaacatgttcgcgctggtgaagttctacaaggcctgcagcgccgccggcatcaag
ccgatcggcggctgcgacctgtggatggccgcgccggacgacccgcgcccgtggcggctc
accctgctgtgccagcaccgcgcgggctatctcaatttgtcgcgactggtttcgcgcgcc
tggcaggaaggccagcacggcggccgtgcgctggtcgaggccggctggctgagcgtcgat
gccagcgacgggctgatcgccctgctcggccgcgagagcgaagtcggccgcctcgcgctg
aaccagggcaacgaggccgcactggcgaagctgcgtccgctggcgcagctgttccccgag
cggctgtacctggagctgacccgctgcggccgcgagggcgaagaagcctggaacaccgcc
gcgctggcgctggccgccgaactgggcctgccggtgctggccagcaacgacgtgcgcttc
ctcacccagaacgatttcggcgcgcacgaggcgcgcgtgtgcatccagcagggccgcgtg
ctggccgaccccaagcgcccgcgcgactacagcgaccagcaatacctgaagacgccggag
gaaatggccgcgctgttcgcggacctgcccgaggcgctggaaaacaccgtcgaactggcg
aaacgctgcaccctggaactgaagttcggcacctactacctgcccgacttcccggtgccc
gcaggccacgacctcgacagccacatccgcgagctggcacggcaaggtctcaaggaacgc
ctggccaacgcgccgctggccgccgaccacacgctcgccgactaccaggcgcggctggag
cgcgagctggacgtcatcgtcaagatgggcttccccggctacttcctgatcgtggcggac
ttcatcaactggggcaaacagaacggcatcccggttggccccggccgcggttccggtgcc
ggctcgctggtggcctgggcgctgaagatcaccgacctggacccgttgcagttcaacctg
ctgttcgagcgcttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgacttc
tgcatggaccgccgcgacgaggtgatcgactacgtggcgcgcaagtacggccgcgaccgc
gtcagccagatcatcacctacggctcgatggccgccaaggccgtgctgcgcgactccggc
cgcgtgctcggcttcggctacacccaagtcgaccgcatcgccaagctgatcccggcgcgg
ccgctcgacctcacgctgtcgtgcgcgctgggccgcagcgagaaggcgaagaaggagccc
gagcgcgtcgtcaaggaattctgcgagctgtacgagcaggacgaggaagcgcgtgcgctg
atcgacctggcgctgaagctcgaaaacctcacccgcaacgccggcaagcacgccggcggc
gtggtgatcgcgcccagcccactcaccgacttcgcgccgctgtactgcgaagccggcggc
ggcggcgtggtgacccagtacgacaaggacgatgtcgaggcggtcggcctggtcaagttc
gacttcctcggcctgcgcacgctgaccatcatcgactgggcggtgaaggcgatcaacgcg
cgccgcgcgaaagccggcgaggccctgctcgacatctcggcgctgccgctggacgacccg
gcgtcgtacgagctgctgaagaaggcgcagaccgtcgcggtgttccagctggaatcctcc
ggcatgcagcgcatgctgaaggacgcgaaacccgaccgcttcgaggacatcatcgcgctg
gtggcgctgtaccgccccggcccgatggacctgatccccagcttcgtggcgcgcaagcac
ggccgcgaggacgtggaataccccgacccgcgcgtcgagccgatcctgaaagagacctac
ggcatcatggtctaccaggaacaggtgatgcagatggcgcagatcgtcggcggctactcg
ctcggcggcgccgacctgctgcgccgcgcgatgggcaagaagaaactcgaggagatggcc
aaggagcgcgccaagttccgcgaaggcgcggcgaaggacggcctcagcggcgagaaggcc
gattccatcttcgacctgatggagaagttcgccggctacggcttcaacaagtcgcatgcc
gccgcctacgcgctggtctcctaccagaccgcctggctgaaggcgcactacccggccgag
ttcatggccgcgacgatctcctcggacatggacaacaccgacaaggtggtgaccttcctc
gacgagtcgcgcgccatcggcatcgccgtgcagccgccggacgtcaacgcgtccgagtac
atgttcgtggcagtggaaccgaaggtcatccagtatggcctcggcgcgatcaagggcgtc
ggccagggcgcctgcgaagccatcgtcgccgagcgcgccaacggcaggtacgccgacctg
gccgacttctgccgccgcgtcgatccgacccggctcaaccgccgcgtgctggaggcgctg
atcctctccggcgctctggatgcgctcgccgccaaccgcgccagcctgatgctgcagctg
cccgacgcgatcaaggccgccgaacagcacctgcgcgaccgccagtccggccagaacgac
atgttcggcgcagcaatgggcaacgccacgccggtgctgaagatcgagttgccgaccgtg
cccgaatggccgctggagcagaagctgcagggcgagcgcgacacgctcggccattacctg
tccggccatcccaccgacccgtggaaggacgagctggcgcagctgtcgagctgcccgctc
ggcgagatcgccgaccgctaccagccgccgaagccgcgcaagaacgaccacgacgacggc
aaccgtttccgccgcggccccgacacgccatggaccgtcgccggcatggtcaccgccgtg
cgcaagcgcggcgacagcgacgcgttcgtgcggctggaggacggcagcggcatcatcgag
gtgagcttcttcggcgagctgtaccagcagatggcgccgctgctgacccgtgacgagatg
ctggtggtcgacggcggcctgcgcatcgacgacttctccggcggcggcttccagctgcgc
gcgcgcagcgcctgctcactggccgacgcctgccgccggcacgcgcgattgctgcagctg
aagttgaacggcatcggcccgggtttcgtcggccagctgcagcaggcgctggccggctac
cgcggcggccgcaccagcgtgaccttgcacggctaccgcaaccgccatgcgcaggccgat
ctcgaactcggcgaagcctggcgcgtggaagccatcccggagctgctgcgcaccgtgcgc
gccctgcccggcgtgcaggccgcgcgcctgcgcatcgtcaagcagcaggactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

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