KEGG   Rodentibacter caecimuris: FEE42_07845
Entry
FEE42_07845       CDS       T06473                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rhey  Rodentibacter caecimuris
Pathway
rhey03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rhey00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FEE42_07845 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhey03021]
    FEE42_07845 (rpoC)
   03400 DNA repair and recombination proteins [BR:rhey03400]
    FEE42_07845 (rpoC)
Enzymes [BR:rhey01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FEE42_07845 (rpoC)
Transcription machinery [BR:rhey03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FEE42_07845 (rpoC)
DNA repair and recombination proteins [BR:rhey03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FEE42_07845 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: QIA77274
UniProt: A0A858BD62
Position
complement(1573701..1577969)
AA seq 1422 aa
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLDVECEKLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREEAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAERAYST
GQAELHSRVKVRITEYVKNEAGELDAVTTLTDTTIGRAILWMIAPKGMPYALFNQTLGKK
AISKLINEAYRRLGLKESVMFADQIMYTGFAYAARSGSSVGIDDMVIPEKKYEIISAAED
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVLNREGKPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDIYKPGTEEVLIARNTLLDEKLCDVLDANSVDSVKVRSVVTCDTNYGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQAKNTGTLH
LANAKFVTNDEGKLVLTSRNTELTVTDAFGRTKEHYKVPYGAVLSKGDGQEVTAGETVAN
WDPHTMPVVSEVTGFVKFVDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDVFLPETDVIAQYFLPGKAIVSLDDGVAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTEGEVYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAIVTNAYDSEFLEGEQVEVARVKIVNRKREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRIKNRQKAAELV
VEAIEEPISAFATDADIEAEFEFIADDATQSLAALLNSEMEE
NT seq 4269 nt   +upstreamnt  +downstreamnt
gtgaaagacttagttaagtttttaaaagcacagtcaaaaaccagcgaagattttgatgtg
attaaaattgggttagcctcaccggatatgatccgttcttggtcatttggtgaagtgaaa
aaaccggaaaccattaattatcgcaccttcaagcctgagcgtgacggtcttttctgtgca
cgtattttcggaccggtaaaagattacgaatgtttatgcggtaaatataaacgtttaaaa
caccggggcgttatttgtgaaaaatgtggcgttgaagtcactcaaaccaaagttcgccgt
gaacgcatggggcatattgaattagcctcaccggttgcgcatatttggttcttaaaatcc
cttccgtcccgtatcggtttattattggatatgccgttgcgtgatattgaacgcgtactt
tattttgaaatgtacatcgtcaccgagccgggcatgacggatttagagcgtggtcaatta
ttaacggaagaacaatatcttgatgctgaagatcgttggcaagatgaatttgaagcaaaa
atgggggcggaagcaatccaagatctattaaaaggtatggatcttgatgtggaatgcgaa
aaattacgtgaagagttacaagaaaccaattctgaaacaaaacgtaagaaaattactaaa
cgtctaaaattattagaagcatttattcagtcgggtaacaaaccggaatggatggtgatg
accgtattaccggtacttccaccggatcttcgtccgttagtaccattagacggcggacgt
tttgcgacttccgatttgaacgatttataccgtcgagtgattaaccgtaataaccgttta
aaacgtttattggatcttatcgcgccggatattattgtgcgtaatgaaaaacggatgttg
caagaatcggtcgatgcgttattggataacggtcgccgcggtcgtgcaattaccggttct
aatcgtcgtccgttaaaatccttagcagatatgattaagggtaaacaaggtcgtttccgt
caaaacctattgggtaaacgtgttgactattccggccgttcggtaatcaccgtaggtcca
tacctacacctacatcaatgcggtttaccgaagaaaatggcattggaattattccgtccg
tttatctatgcaaaattagaaagtcgcggttatgccacaaccattaaagcggcgaagaaa
atggttgagcgtgaagaggcgattgtttgggatattcttgcggaagttattcgcgaacat
ccgattttattgaaccgtgctccaacacttcaccgtttgggtattcaagcgtttgaacca
atcttaatcgaaggtaaagcgattcaattacacccgctcgtgtgtgcggcgttcaatgcg
gacttcgatggtgaccaaatggcggttcacgttccgttaacccttgaggcccaattagaa
gcccgcgcgttgatgatgtccaccaataacgtcctttcaccggcgaacggtgatcctatt
atcgtgccatcacaagacgtggtattggggctttattatatgacccgagaaaaagtgaac
ggtaaaggcgaaggaatgttattgcaagatccgcgtgaggcggaaagagcttattctacc
ggtcaggcagaattgcattctcgtgtcaaagtacggatcactgaatatgtaaaaaatgaa
gccggcgaacttgatgcagtgacaacattaacggataccaccattggccgtgcgatttta
tggatgattgcaccgaaaggtatgccttatgcgttgtttaatcaaacattaggcaaaaaa
gcgatctccaaattaattaatgaagcataccgtcgtttaggcttaaaagaatcggttatg
tttgccgaccaaattatgtacaccggttttgcttatgcggctcgctccggttcatctgtc
ggtattgacgacatggtgatccctgagaagaaatatgaaattatttcggcagcggaagac
gaagtagcggaaatccaagagcaattccaatccggtcttgtgacagcaggcgaacgttac
aataaagtgatcgatatttgggctgcggcaaacgaacgtgttgcaaaagcgatgatggaa
aatctttctacggaagaagtgctgaaccgtgaaggtaaacctgaaaaacaagcctcgttt
aatagtatttttatgatggcggattccggtgcgcgtggttctgcggcacagattcgtcag
ctggcggggatgcgtggtttgatggcgcgtccggacggctcgatcattgaaacgccaatc
accgcgaacttccgtgaagggttgaacgtacttcaatactttatttcaacccacggtgcg
cgtaaaggtttggcggataccgcattgaaaacggcgaactccggttatttgacccgtcgt
ctagttgacgtggcacaagacttggtgattattgaagatgactgtggtacgcacgaaggc
ttagtgatgaccccgttaattgaggggggcgatgaaaaagtcccacttcgcgagttagta
ttaggtcgtgtagcggcagaagatatctataagcctggaacagaagaagtcttaattgca
cgtaatacgttactagatgaaaaactttgtgatgtgttagatgcaaattcggtagatagc
gtgaaagtacgctcagtagtaacctgtgataccaattatggcgtctgtgctaaatgttac
ggtcgtgatttggcgcgcggtcacttaatcaaccaaggtgaagcggtaggcgttattgcg
gcgcaatctatcggtgaaccgggaacacagttaaccatgcgtacgttccatattggtggt
gcggcgtctgcggcagcaaaagaatctagcgtacaagcgaaaaataccggtacattacac
ttagccaatgcgaaatttgtcacgaatgatgaaggtaaattagtgttaacttcccgtaat
acggaattaactgttactgacgcattcggtcgtaccaaagaacactataaagtgccttat
ggtgcggtattaagtaaaggtgacggtcaagaagtcacggcgggtgaaaccgtagcgaac
tgggatcctcatactatgccggttgtgtctgaagtgaccggtttcgtaaaattcgtggat
atcgtggacggtttaaccgtaacacgtcaaaccgatgaattaactggtctatcctcgatt
gtggtacaagatgtgggtgaacgtgcaacggcaggtaaagatttacgcccaactattaaa
ttagttgacgcaaacggcaatgacgttttcttaccggaaaccgatgtcatcgcacaatac
ttcttaccgggtaaagcaattgtaagtttagacgatggcgtagcggtaaaagtgggtgaa
cctttagcccgtattccacaagaatctgtgggaacgaaagatattaccggtggtcttcca
cgcgttgcagacttatttgaagcccgtaaaccgaaagagccggcaattttggcggagatt
tcaggtatcgtatccttcggtaaagaaaccaaaggtaaacgtcgtttactgatcacaccg
actgaaggcgaagtgtacgaagaaatgattccgaaatggcgtcagctcaacgtatttgaa
ggtgagatggttcaacgtggtgatgtaatctccgatggtgcggaaactccacacgatatt
ttacgtttacgcggtgtacgtgccgtaaccgaatatattgtgaatgaagtgcaagatgtt
taccgcttacaaggggtaaaaatcaatgataagcacattgaagtcatcgttcgccaaatg
ttgcgtaaagcgatcgtcacaaatgcttacgactctgagttcctagaaggggagcaggta
gaagtggcacgcgtgaaaatcgtaaaccgtaaacgtgaagcggaaggtaaaccgccggtt
gaatttgagcgcgaattattgggtatcaccaaagcgtctcttgcgacggaatccttcatc
tctgcggcatcgttccaagaaaccacacgtgtgcttaccgaagcggcagtggcaggtaag
cgtgatgaattacgtggcttgaaagaaaatgttatcgttggtcgtttaattccggcaggt
accggttttgcctatcaccaaaaccgcattaaaaaccgtcaaaaagcagcggaattagtg
gtggaagcgatcgaagagcctatttctgctttcgcaaccgatgcggatatcgaagcggaa
tttgaatttatcgcagatgatgcaacgcaaagcctagcggcattattaaattccgaaatg
gaagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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