KEGG   Rodentibacter caecimuris: FEE42_09940
Entry
FEE42_09940       CDS       T06473                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
rhey  Rodentibacter caecimuris
Pathway
rhey03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhey00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FEE42_09940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rhey03019]
    FEE42_09940
   03016 Transfer RNA biogenesis [BR:rhey03016]
    FEE42_09940
Enzymes [BR:rhey01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     FEE42_09940
Messenger RNA biogenesis [BR:rhey03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FEE42_09940
Transfer RNA biogenesis [BR:rhey03016]
 Prokaryotic type
  tRNA degradation factors
   FEE42_09940
SSDB
Motif
Pfam: RNB CSD2 OB_RNB HTH_12 S1 RNA_pol_Rbc25 OB_Dis3 Vps27_GAT-like
Other DBs
NCBI-ProteinID: QIA77637
UniProt: A0A858BIN2
Position
complement(2023218..2025572)
AA seq 784 aa
MAKKQKKRTLQDPHYQRELAKYGNPIPSRELILRVISENNAPMNREEILTALSIRDEEQM
EAMRRRLRAMENDGQLVFTKRKRYALPEKLDLVKGLVIGHREGYGFLQVEGKKEDFFIPN
PQMQRVMHGDFVLAQPEGLDHRGRREVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRI
GRDILVPNEHRNGARMGQVVVVELQERSAAFNQPIGMITEILGDNMAKGMEVEIALRNHD
IPHKFPSAVEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKQGKGW
KLWVAIADVSYYVRLRSALDTEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCM
VCEMQVSAKGKLTAYRFYEAVMNSHARLTYTKVAKILEGDAELQERYVSLVPNLEELHHL
YQALLSSRHQRGAIDFETIESKFIFNAMGRIERIEPVIRNDAHKIIEECMILANIAAANF
MEKHNEPALYRIHAMPSEEKLTSFRTFLSEFGLTLEGGRKPTPKDYAALLEKIKTRPDHE
LIQIMLLRSLSQAVYNADNIGHFGLALEEYAHFTSPIRRYPDLTLHRSIKYLLAKEQGIK
RKTTNSGGYHYSLDEMDLLGDHCSMTERRADDATREVADWLKCEYMQDHISSEFNGVISS
VTGFGLFVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGIQYRLGDKVRIRVEAV
HLEQKMIDFSLVSSEHKPRRVGKTAKEKTKKVFKELPEKVTRKRKSAVKNKKVSKKPRKS
KIQS
NT seq 2355 nt   +upstreamnt  +downstreamnt
atggcaaaaaaacagaaaaaacgcacactccaagatcctcattatcaacgggagttagct
aaatacggcaatccgattccaagccgggaacttattttacgcgtaattagcgaaaataac
gcaccaatgaatagggaagaaattttgaccgcactttccattcgtgacgaggaacaaatg
gaggctatgcgtcgccgtttgcgtgcgatggaaaatgacggacaacttgttttcaccaaa
cgtaaacgctatgccttaccggaaaaattagacctggttaagggtttggtaataggtcat
cgggaaggctatggtttcttgcaagtcgagggtaaaaaagaggactttttcattccaaat
cctcaaatgcaacgggttatgcacggtgatttcgtactggctcaaccggagggtctggat
catcgcggtcgccgtgaagttcgcattgtacgtgtgctagaaagccgtaaaaaacaaatt
gtcggtcgtttctttttggaaaacggttttagttatgtggtaccggacgatagccgtatc
gggcgtgatattcttgtaccaaacgaacatcgtaacggtgcgcgtatggggcaagtggtg
gtagtcgaattacaagaacgttccgccgccttcaatcagccgatagggatgattacggaa
attttaggcgacaatatggcaaaaggaatggaagtggaaattgctttgcgtaatcacgat
attcctcataaattcccaagtgcggtagaaaaatacgtcaaaaaatttaccgaagaggtg
cctgaagaagccaaaaaaggtcgtgttgatttacgcaatttaccgttagttaccattgat
ggcgaagatgcccgcgattttgatgatgcggtctattgtgaaaaacagggtaaaggctgg
aaactttgggtggcgatcgccgatgtgagctattatgtgcgtttacgttccgccttggat
acggaggctcacaaccgagggaactcggtctatttcccaaatcgtgtagtaccgatgtta
ccggagattttatctaacggtttgtgttcgctcaatccgcaggtcgatcgtctctgtatg
gtatgtgaaatgcaagtttcagccaaaggtaaactcaccgcctatcgtttttatgaagcg
gtaatgaattcccacgcacgcttaacctacacaaaagtagcaaaaatattggaaggtgat
gcagaattacaggaacgttatgtctccctcgtgccgaatttggaagaacttcatcatctc
tatcaagccttgctttcctcccgacaccaacgcggtgcgattgattttgaaacgattgaa
agcaaatttattttcaatgccatgggacgtattgagcggattgaaccggtaattcgtaac
gatgctcataaaatcattgaagaatgtatgatccttgccaatattgctgccgctaatttt
atggaaaaacacaatgaaccggcactatatcgtattcacgcaatgccaagtgaagaaaaa
ctcacgtcattccgtacttttttgagtgagttcggtttaacgttggagggcgggagaaaa
ccgacaccgaaagattatgccgctctgctagaaaaaataaaaacacgaccggatcacgag
ctgattcaaattatgttgctacgttctttaagccaagcagtgtacaatgcagacaatatc
gggcattttggcttagcactggaagaatatgcccattttacttcccctatccgccgttat
ccggatttaacactccatcgcagcattaaatatttacttgccaaagaacaggggataaaa
cgtaaaaccactaacagtggcggctatcattattcccttgatgaaatggatctattgggc
gatcattgttcaatgacggagcgccgcgccgacgacgcgactcgcgaagttgcggattgg
ttgaaatgcgagtatatgcaagatcacattagcagtgaatttaacggggtgatttcttcc
gtaaccggttttggattgtttgtacgtttggacgatttattcattgacggcttagtgcat
atttctaccttagaaaatgactactatcaatttgacgctgccaaacagcgtttaattggc
gaaaatagcggcatacaataccgattgggcgataaagtgcgtattcgggtggaagccgtt
catttagaacaaaaaatgatagatttttcactggtcagtagcgaacacaaaccacgtcgc
gtcggtaaaacggcaaaagaaaaaactaaaaaagtattcaaagagttgcctgaaaaggtg
acgagaaaacgcaaaagtgcggtcaaaaataaaaaagtatctaaaaaaccgagaaaatcg
aaaatacaatcctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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