KEGG   Sinorhizobium fredii NGR234: NGR_a01260
Entry
NGR_a01260        CDS       T00888                                 
Symbol
nifA
Name
(GenBank) Sigma54-dependent transcription activator NifA; required for symbiotic nitrogen fixation
  KO
K02584  Nif-specific regulatory protein
Organism
rhi  Sinorhizobium fredii NGR234
Pathway
rhi02020  Two-component system
Brite
KEGG Orthology (KO) [BR:rhi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    NGR_a01260 (nifA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rhi03000]
    NGR_a01260 (nifA)
Transcription factors [BR:rhi03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    NGR_a01260 (nifA)
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 GAF HTH_8 AAA_5 AAA_2 GAF_2 Mg_chelatase AAA MCM GAF_3 AAA_30 AAA_16 BrxC_BrxD AAA_3
Other DBs
NCBI-ProteinID: AAB91886
UniProt: Q53206
Position
pNGR234a:154853..156637
AA seq 594 aa
MQAQALDNVSKAAFSRREPRAVRTTLKVFPRKNWLDECMTELSPKTMHKRDLGCSGLYRI
SKVLITSASLEIKLANVINTLPALLPMRRGAIVVVGAEGEPETTATFGVEPPSSGARHIA
AKAAIDRIVAKGAPLVVPDTCKSELFQDELQSIVSGTGQVTFIGVPMKADQETLGTLWID
RAKDGAATRTQFEEEVRFLSMVANLAARAVRLNGHESRDSRPIGEEGDRKISGGDKELPE
PTRQRPTRIDWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRR
KKPFVKLNCAALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAF
QAKLLRVLQEGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFL
PPLRERNGDIPRLAKVFLDRFNRENNRNLEFTPAALEILSRCKFPGNVRELENCVRRTAT
LARSATIVPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASLGYPAGP
GGLTVAPHLSDRELLISAMEKAGWVQAKAARILGLTPRQVGYALRRHHIQVKKI
NT seq 1785 nt   +upstreamnt  +downstreamnt
gtgcaagcgcaagcacttgataatgtcagcaaggcggcattttctcgtagggagccaagg
gccgttcgtacgacgctcaaggtgtttcctcgtaagaattggctcgatgagtgtatgact
gaattatcccctaaaaccatgcacaaacgggacttggggtgcagcggtctctatcggata
tcgaaggttttgatcacttcagccagcctcgagatcaagcttgccaatgtgattaacacc
ctccccgcacttttgccaatgcggcgcggcgcaatcgtcgttgttggcgctgaaggagag
cccgagacaactgcgacgttcggggttgagcctccatcatcaggcgcgcgccacattgct
gcgaaggctgcaatagatagaatcgtcgcaaaaggtgcgccgctggtcgtaccggacact
tgcaagtcggaactgttccaggatgagcttcagagtatcgtgagcggcactggccaagtc
accttcattggtgtcccgatgaaggccgatcaagaaacgcttggaacattatggatcgac
cgcgccaaggatggcgcagccaccagaacacaatttgaggaagaggtgcgtttcctgtcg
atggtcgccaaccttgcggcacgagcggttcggctgaatggccacgagagccgcgatagt
cgaccgatcggcgaggagggcgatcgcaagattagtggaggcgacaaggaactgcctgaa
ccaacccgacaacggcctacgagaatcgactggattgtcggggaaagccccgcactcagg
caagtggttgaaagcgtcaaagtcgttgcacaaaccaactctgcggtgcttctcaggggc
gaaagcggcacaggcaaggaattctttgcaaaggcaatccacgagctttcacctcgcaga
aaaaagccgtttgtgaagttgaattgcgcggcactgtctgcaggcgtcctggaatcggaa
ctgtttgggcatgagaagggcgcctttacgggggccatctctcagcgcgcaggccgtttc
gaactggcggatggcgggacgctgttgctcgacgaaatcggcgagatctcgccggccttt
caagcgaaactgttgcgcgtcttgcaggaaggtgagcttgagcgagttggcggcacaaaa
acgctcaaggtggacgtccgactcatatgcgccaccaacaaggacctggagacggcggtg
gcggagggggagttccgggctgacctttattatcgcatcaatgtagtgcctctcttttta
ccgcctctcagggagcgaaatggagatattccacgccttgcgaaggttttcctcgaccgg
ttcaacagggaaaacaatcgcaatctcgaattcacgcctgcggcactcgagatcctgtca
agatgcaaatttcccggcaacgtccgagagcttgaaaactgcgtccgcaggaccgccact
ctcgcacgttcggcgacgattgttccatcagatttctcctgccagaatgaccagtgcttt
tcttcaatgctcgggaaaactgctgacagaccgcttggcagccattcgctcaatggattg
gccatgagcaaacgtttgccagtcgaatcgccggccagtctcggttaccccgccggccct
ggcggcttaacggtggcaccacatctatcggaccgcgagctgctaatcagcgcgatggag
aaggccggctgggttcaggcgaaggcagctcggatcctcggcctcacaccgcggcaagtc
ggctatgctttacggcggcatcatatacaggtgaaaaaaatctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (15)   
   Pfam (15)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system