KEGG T00888: NGR

Sinorhizobium fredii NGR234: NGR_c21620

Entry

NGR_c21620        CDS       T00888

Name

(GenBank) putative substrate-binding component of ABC transporter protein

K02035

peptide/nickel transport system substrate-binding protein

Organism

rhi Sinorhizobium fredii NGR234

Pathway

rhi02024

Quorum sensing

Brite

KEGG Orthology (KO) [BR:rhi00001]
09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NGR_c21620
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rhi02000]
    NGR_c21620
Transporters [BR:rhi02000]
ABC transporters, prokaryotic type
  Peptide and nickel transporters
   Peptides/nickel transporter
    NGR_c21620

SSDB

Motif

Pfam:

SBP_bac_5 DUF6086

Other DBs

NCBI-ProteinID:

ACP25923

UniProt:

C3MET2

Position

2231736..2233325

AA seq 529 aa
MSDYKDYLTRQVMLGKINRREFLGRAAALGIAASTANTLFAVSAAAQEPKRGGHLKLGLE
GAAATDSKDPAKALSQFLFVVIRNWGDLLVETHPTTGAAVPALAESWEPSADAATWTFAI
RKGVKFHDGKELTVEDVVKTLQRHTDDKSESGALGVMKSIKEIKADGGKLVLTLTEGNAD
LPLLLSDYHLVIQPNGGMDNPDAMIGTGPYKVASFEPGVRATFERNQDDWRTDRGYVDTV
ELIAMNDATARIAALSSGQVHFINRVDPKTVSLLKRAPTVEILNTSGRGHYVFIMHCNTA
PFDNNDLRMALKLAMDRETMVQRILGGYGKIGNDFPINDTYALFPEGIEQRVYDPDKAAF
HYKKSGHSGPVLLRTSDVAFPGAVDAAVLYQESAKKAGIEIEVKREPGDGYWTNVWNAQP
FCTSYWGGRPTQDQMYSTAYLSNADWNDTRFQREDFDKLLLQARSELDEPKRKDMYRTLA
MMVRDEGGVILPMFNDFVNASTKQVKGYVHDIGNDMSNGYVATRVWLDA

NT seq 1590 nt +upstreamnt +downstreamnt
atgagcgattacaaggattatctgacacgacaggtcatgctgggcaaaatcaaccggcgc
gaatttctcggacgggcggctgccctcggcatcgccgcatcgactgcgaacacgctgttt
gcggtgagcgccgcggcgcaggagccgaaacgcggcgggcaccttaagcttggcctcgaa
ggcgcggccgcaaccgattcgaaagacccggcaaaggcgctttcacaattcctgttcgtc
gtcatcagaaactggggcgacctgctcgtcgaaacccacccgacgaccggtgcggccgta
ccggcgcttgcagagtcctgggagccttccgccgacgcggcgacatggaccttcgcgatc
cgcaagggcgtcaaattccatgatggcaaggaactgacggtagaggacgtcgtcaagacg
ctgcagcgtcacacggacgacaagtcggagtcgggcgcccttggcgtgatgaaatccatc
aaggaaatcaaggccgatggcggcaagctcgtgctgacgctgaccgaaggcaatgccgac
ctgccgctgctgctttcggattatcacctcgtcatccaaccgaacggcggtatggacaac
cccgacgccatgatcggcaccggtccctacaaggtcgcgagcttcgaaccgggcgtgcgt
gccactttcgaaaggaaccaggacgactggcgcacggatcgtggctatgtggacacggtc
gaactgatcgccatgaacgatgcgacggcgcgcatcgccgcgctttcgtccggtcaggtg
cactttatcaaccgcgtcgatccgaagacggtcagcctcctgaagcgcgcgccgaccgtg
gaaatcttgaatacatccggccgcggccactacgtcttcatcatgcattgcaacaccgcg
ccgttcgacaacaacgacctcaggatggcgctgaagctggcgatggatcgcgagaccatg
gttcagcgcatcctcggcggttacggcaagatcggcaacgacttcccgatcaacgacacc
tatgccctcttcccggaaggcatcgagcagcgtgtctatgatccagacaaggccgccttc
cactacaagaagtcgggccacagcgggccggtgctgctgcgcacctccgacgtcgccttc
ccgggcgcggtggatgccgccgttctctaccaggaaagcgccaagaaggccggcatcgag
atcgaggtcaagcgcgagccgggcgacggctactggaccaacgtctggaacgcccagcca
ttctgcacctcctattggggcgggcgcccgacgcaggaccagatgtactcgaccgcctat
ctttcgaacgccgactggaacgacacccgcttccagcgtgaggacttcgacaagctcctg
ctccaagcgcgttccgaactggacgagcccaagcgcaaggacatgtatcgcaccctggcg
atgatggtgcgggacgaaggcggcgtgatcctgccgatgttcaatgacttcgtgaacgcg
tccaccaagcaggtgaagggctacgtccacgacatcggcaacgacatgtcgaacggctat
gtcgcaacccgggtgtggctggacgcctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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