KEGG   Rhizobium sp. Kim5: Kim5_CH03044
Entry
Kim5_CH03044      CDS       T05501                                 
Name
(GenBank) exonuclease RNase T/DNA polymerase III protein
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
rhk  Rhizobium sp. Kim5
Pathway
rhk03030  DNA replication
rhk03430  Mismatch repair
rhk03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Kim5_CH03044
   03430 Mismatch repair
    Kim5_CH03044
   03440 Homologous recombination
    Kim5_CH03044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhk03032]
    Kim5_CH03044
   03400 DNA repair and recombination proteins [BR:rhk03400]
    Kim5_CH03044
Enzymes [BR:rhk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Kim5_CH03044
DNA replication proteins [BR:rhk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Kim5_CH03044
DNA repair and recombination proteins [BR:rhk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Kim5_CH03044
SSDB
Motif
Pfam: RNase_T
Other DBs
NCBI-ProteinID: ARQ59082
Position
complement(3056309..3056899)
AA seq 196 aa
MKTIAIDFETANEQRGSACSVGLAWIEEGRVIRVEERLIRPREMRFSGMNIAIHGIRPED
VEDAPEFPEVMDEFHDDFRGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMAQR
IWPHFLSHRLNLIAEHLGLRFMHHNAAEDAAVCAAAAIEMAKAVKAKAVEAIPALIGMTP
GRLMARGYAPCTCRKA
NT seq 591 nt   +upstreamnt  +downstreamnt
ttgaagaccattgcgattgatttcgagacggcgaacgagcagcgcggcagcgcctgttcc
gtcggccttgcctggatcgaagagggcagggtgatacgcgtcgaggaacggctgatccgg
ccgcgggagatgcgcttttccgggatgaacatcgccattcacggcatccggccggaagat
gtcgaggatgcgccggagtttcccgaggtgatggatgagttccatgacgatttcaggggc
gcgacgatgattgcgcataatgccgccttcgatttcagcgtctggcgggcgagcctcgat
ctctaccggcagtcctatcccgaactgacctacctctgcagcctgaagatggcgcagcgg
atctggccgcattttctctcgcaccggctgaacctgatcgccgagcatctcggcctgcgc
ttcatgcaccacaacgccgccgaggatgccgccgtttgcgcggcagcggcgatcgagatg
gccaaggcagtcaaggcgaaagccgtcgaggcgatcccggcactgatcggcatgacgccg
gggcggctgatggcgcgcggctatgccccctgcacttgccgaaaggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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