KEGG   Rhodovulum sp. MB263: B5V46_16275
Entry
B5V46_16275       CDS       T04771                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rhm  Rhodovulum sp. MB263
Pathway
rhm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rhm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    B5V46_16275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhm03021]
    B5V46_16275
   03400 DNA repair and recombination proteins [BR:rhm03400]
    B5V46_16275
Enzymes [BR:rhm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     B5V46_16275
Transcription machinery [BR:rhm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     B5V46_16275
DNA repair and recombination proteins [BR:rhm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      B5V46_16275
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RnfC_N
Other DBs
NCBI-ProteinID: ARC90052
UniProt: A0A1V0I1F2
Position
complement(3493409..3497545)
AA seq 1378 aa
MAQSYVGQKRLRKYYGKIQEVLEMPNLIEVQKSSYDLFLNSGDGAAPADGEGIQGVFQSV
FPIKDFNETAVLEFVRYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVSFRLER
NRGWVTKFFPERVRGTRPTYDLVDADTGEVICKAGDKVTPRQVKKLIEEGRVTELMVPFD
HIVGRYVAKDIINEETGAIYVEAGDELTWVVDKDGDVTGGTLKELLDAGITDIPVLDIDN
VTVGPYMRNTMAMDKNMGRDTALMDIYRVMRPGEPPTVEAATNLFNSLFFDSERYDLSAV
GRVKMNMRLNLDAPDTQRTLRHDDIISCIKALVELRDGKGEVDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQNNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNEGQVTDEVHYMSATEEMRHVVAQANATLDEDGKFLNEMVNTRQAG
EYTLNPVDTVDLIDVSPKQLVSVGASLIPFLENDDANRALMGANMQRQAVPLLQADAPFV
GTGMESKVAIDSGAAIQARRGGIIDQVDAQRIVIRATEDLEPGDPGVDIYRLRKFQRSNQ
NTCINQKPLVKVGDTVLKGEVIADGPSTDMGELALGKNVAVAFMPWNGYNYEDSILISER
VARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDEMGILERNIYARLKSMILGKVAVKGPRGVKPNSEITEEL
LETLSRGQWWQLALEGEEDAGQVEALNSQFEAQKRALEHRFEDKVEKVRRGDDMPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPMEDMPFLEDGTPVDLVMNPLGVPSRMN
VGQILETHMGWAARGLGQQIQEALHEYKRSGDLTPVRDAMHHAYGDEVYDEVIRDMDEAH
LVESASSVTRGVPIATPVFDGAKEQDINDALIRAGFDTSGQSVLFDGQTGERFARKVTVG
MKYLLKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDDE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atggctcagagctacgttggccagaaacgactccgcaaatactacggcaagatccaggaa
gttctggagatgccgaacctcatcgaggtccagaaatcctcctatgatctgttcctgaac
tccggcgacggggcggcacccgccgatggcgagggcatccagggggtgttccagtcggtc
ttcccgatcaaggacttcaacgagacggccgtgctcgaattcgttcgttacgagctcgag
aagccgaaatacgatgtcgaggaatgccagcagcgcgacatgacctactcggcgccgctc
aaggtgacgctgcgtctgatcgtgtttgatgtcgacgaggataccggcgccaagtcggtg
aaggacatcaaggaacaggacgtgttcatgggcgacatgccgctcatgacccagaacggg
accttcatcgtgaacgggaccgaacgggtgatcgtgtcccagatgcaccggtccccgggc
gtcttcttcgaccatgacaagggcaagacccattcctcgggcaagctgctctttgcctgc
cggatcattccctatcgcggctcctggctcgatttcgaattcgacgccaaggacatcgtc
ttcgcgcggatcgaccgccgccggaagctgccggtgacgaccctgctctatgcgctgggg
ctcgatcaggaaggcatcatggatgcctattacgataccgtctcgttccggctggaacgc
aaccgcggctgggtcaccaagttcttccccgaacgcgtgcgcggcacccgtccgacctat
gatctggtcgatgccgataccggcgaggtgatctgcaaggccggtgacaaggtcacgccg
cgtcaggtcaagaagctgattgaggaaggccgggtcaccgagctgatggtgccgttcgac
catatcgtcggccgttatgtcgccaaggacatcatcaacgaagagaccggcgcgatctat
gtcgaggccggcgacgagctgacctgggtcgtcgacaaggatggcgatgtcaccggcggc
actctgaaagagctgctggatgcgggcatcaccgacatcccggtgctggacatcgacaat
gtcaccgtcggcccgtacatgcgcaacaccatggcgatggacaagaacatgggccgcgac
accgcgctcatggacatctaccgcgtcatgcgcccgggcgagccgccgaccgtcgaggcc
gcgaccaacctgttcaactcgctgttcttcgattccgaacgctacgacctgtcggccgtc
ggccgggtcaagatgaacatgcgcctgaacctcgatgcgcccgacacccagcgcacgctg
cgccatgacgacatcatctcgtgcatcaaggccctggtcgaattgcgcgacggcaagggc
gaagtcgacgatatcgaccacctcggcaaccgccgggtccggtccgtcggcgagctgatg
gaaaaccagtaccgcgtcggcctgctgcggatggaacgcgccatcaaggagcggatgtcc
tcggtcgagatcgacacggtgatgccgcaggatctaatcaacgccaagcccgcggctgcc
gcggtgcgcgagttcttcgggtcctcgcagctgtcgcagttcatggaccagaacaacccg
ctgtcggaagtcacccacaagcggcgcctctcggccctcgggccgggcggtctgacccgt
gagcgcgcgggcttcgaggtgcgcgacgttcaccccacccactatggccggatgtgcccg
atcgagacgcccgaggggccgaacatcggtctgatcaactcgctggccaccttcgcgcgg
gtgaacaagtacggcttcatcgagaccccttaccgggtggtcaatgagggccaggtgacc
gacgaggtccactacatgtccgcgaccgaagagatgcggcacgtcgtggctcaggccaac
gccacgctcgacgaggacggcaagtttctcaacgagatggtcaacacccggcaggccggt
gaatatacgctgaacccggtcgacactgtcgacctgatcgacgtgtctccgaagcagctg
gtctcggtcggggcctcgctgatcccgttcctcgaaaacgacgacgccaaccgcgcgctg
atgggcgcgaacatgcagcgtcaggccgtgcctctgctgcaggccgatgcgcccttcgtg
ggcaccggcatggaaagcaaggtcgccatcgactcgggcgccgcgatccaggcccgccgc
ggcgggatcatcgaccaggtcgatgcgcagcggatcgtgatccgggcgacggaagatctg
gagccgggcgatccgggcgtcgacatctaccgtctgcgcaagttccagcggtcgaaccag
aacacctgcatcaaccagaagcctctggtgaaggtgggcgacacggtgctgaagggcgag
gtgatcgccgacggcccgtcgaccgacatgggcgagctggccctcggcaagaacgtggcc
gtcgcgttcatgccctggaacggctacaactacgaggactcgatcctgatctcggaacgg
gtcgcccgcgatgacgtcttcacctcgatccatatcgaggaattcgaggtcgccgcccgc
gataccaagctgggtccggaagagatcacccgcgacatccccaatgtcggcgaggaagcc
ctgcgcaacctcgacgaggcaggcatcgtctatatcggcgccgaagtcggcccgggcgat
attctcgtgggcaagatcacgcccaagggcgaaagcccgatgactccggaagaaaagctt
cttcgggcgatcttcggcgaaaaggcgtctgatgtgcgggatacctcgctgcgcctgccg
ccgggggattacggcaccgtcgtcgaggtgcgggtcttcaaccggcacggcgtcgaaaag
gacgaacgtgccctgcagatcgagcgcgaggaagtcgaacgtcttgcccgtgaccgggac
gacgagatgggcatcctggaacgcaacatctatgcgcgtctgaagtcgatgatccttggc
aaggtcgccgtgaaggggccgcgcggggtcaagccgaactcggagatcaccgaggaactg
ctggaaacgctgtcgcgcggccagtggtggcagcttgccctggaaggcgaagaggatgcc
ggacaggtcgaggccctgaactcgcagttcgaggcgcagaaacgtgcgcttgagcaccgc
ttcgaggacaaggtcgagaaggtgcgccgcggcgacgacatgcctcccggcgtgatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagcttcagcccggcgacaagatggccggc
cgtcacggcaacaagggcgtcgtctcgcgcgtggtgccgatggaggacatgccgttcctc
gaggacgggaccccggtcgatctggtgatgaacccgctcggcgtgccgtcgcgtatgaac
gtcggccagatcctcgagacccatatgggctgggccgcgcgcggcctggggcagcagatc
caggaggcgcttcacgagtacaagcgctcgggcgatctgacgccggtgcgggatgcgatg
catcacgcctatggcgacgaggtctatgacgaggtgatccgcgacatggacgaggcgcat
ctggtcgaatccgcgtcctcggtgacccgcggcgtgccgatcgcgactccggtcttcgac
ggcgccaaggagcaggacatcaatgatgcgctgatccgtgcgggcttcgacacctcgggg
cagtcggtgctgttcgacggccagacgggcgaacgtttcgcccggaaggtcaccgtcggc
atgaagtacctgctgaagctgcaccaccttgtcgacgagaagatccacgcgcggtcgacc
gggccctacagcctcgtcacccagcagcccctgggcggcaaggcacagttcggcggccag
cgtttcggggagatggaggtctgggctctggaagcctatggcgccgcctataccctgcag
gaaatgctgacggtgaagtcggacgatgtggcgggccggaccaaggtctatgagtccatc
gtcaagggcgaagacaatttcgaggccggcgtgccggaatccttcaacgttctggtgaag
gaagtccgcggccttgggctgaacatggaactcctggacgcggaggacgacgagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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