KEGG   Rhizobium sp. N1341: AMJ98_CH01360
Entry
AMJ98_CH01360     CDS       T04420                                 
Name
(GenBank) RNA polymerase sigma factor protein
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
rhn  Rhizobium sp. N1341
Brite
KEGG Orthology (KO) [BR:rhn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhn03021]
    AMJ98_CH01360
Transcription machinery [BR:rhn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AMJ98_CH01360
SSDB
Motif
Pfam: DUF6596 Sigma70_r2 Sigma70_r4_2 TPR_2 TPR_12 TPR_1 Sigma70_r4 TPR_8 TPR_14 TPR_7 TPR_11 ANAPC5 Sigma70_ECF TPR_21 TPR_10 HTH_23 TPR_16
Other DBs
NCBI-ProteinID: ANL09071
Position
complement(1373847..1375088)
AA seq 413 aa
MEQVIEDIYRQHSRRVLATLIRLLGDFDRAEDALHDAFAAAARTWPADGIPGNPFAWLVS
TGRFKAIDTIRRRARFDASQQHIEDSLYTFDETEIGDMEAIEDDMLRLVFTCCHPVIPAD
AQMALALREICGLTTEEIAHAFLIPAPTVAQRIVRAKGRIRAANIPYEVPGREALPERLD
RVLHVIYLVFNEGYSASSGDAVVRADLTGEAIRLARLLLALLPHPDVCGLLALMLLQDSR
RSARSSEEEALVLLADQDRSLWDRAKISEGLTLLAEAMRTGEIGTYTVQAAIAAEHAKVP
TAEETDWRRIAFYYDLLLAAQPSPVVELNRAVAIAMAEGPATGLDLIDAILGRQELTAYH
LAHSARADLLRRLGRREEAIAAYETALSLCRQEPEQAFLRNRISELAAAPERQ
NT seq 1242 nt   +upstreamnt  +downstreamnt
ttggaacaggtgatcgaagatatctacaggcagcattcgcgtcgggttctggcgacgctg
atccgtctgctcggcgatttcgaccgtgccgaggacgcgctgcacgatgcctttgccgcg
gcggcacggacctggccggctgacggcattcccggcaaccctttcgcttggctcgtttcg
acgggacgcttcaaggcaatcgatacaatccgccgccgggcgcgcttcgatgcctcgcag
cagcacatcgaggacagtctctacacgttcgacgaaacggagatcggcgacatggaagcg
atcgaagacgatatgctgcggctggtcttcacctgttgccatcccgttattcccgccgat
gcgcagatggcgttggcgcttcgggaaatctgcgggctgaccaccgaagagatcgcccat
gccttcctcattccggcgccgacggtcgcccagcggatcgtgcgcgccaaaggcaggatc
cgggctgcgaacatcccttatgaagtgccgggccgcgaggcgctgcccgaacggctcgac
cgagtgctgcatgtcatctatctcgtcttcaacgaaggctattccgcctcttcgggagac
gcggtcgttcgcgccgatctgaccggcgaggccatccggctggcgcggctgctgctggca
ctgctgccgcatcccgacgtttgcggacttctggccctgatgctgctgcaggattcccgt
cgcagcgcgcgcagcagcgaggaggaagcactggtgctgcttgccgatcaggaccgctcg
ctctgggaccgcgccaagatctcggaaggtctgacactcctagccgaggcaatgcggaca
ggagagatcggcacctatacggtgcaggcggcgatcgccgccgaacatgcgaaggtgccg
accgccgaggaaaccgactggcggcgcatcgccttctattatgacctccttctggcggcc
cagccctcaccggtcgtcgaactcaaccgcgccgtggcgatcgcgatggcggaaggaccg
gcgacaggcctggatctgatcgatgccattctgggccgccaggagctcacggcctatcac
ctcgcccattcggcccgcgccgatctcctgcgccgtctcggccggcgagaagaggcaatc
gcggcctatgaaacggcgctgtcgctctgccggcaggagccggagcaggcttttttgcgg
aaccggatttcagagcttgccgcggcgcccgagcggcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (23)   

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