KEGG   Roseburia hominis: RHOM_09595
Entry
RHOM_09595        CDS       T01621                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rho  Roseburia hominis
Pathway
rho03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rho00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHOM_09595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rho03021]
    RHOM_09595
   03019 Messenger RNA biogenesis [BR:rho03019]
    RHOM_09595
Transcription machinery [BR:rho03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RHOM_09595
Messenger RNA biogenesis [BR:rho03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RHOM_09595
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA AAA_25 NACHT AAA_14 AAA_22 Fan1_SAP SAP ATP11 AAA_24
Other DBs
NCBI-ProteinID: AEN97030
UniProt: G2SXB6
Position
complement(2082768..2084183)
AA seq 471 aa
MREKYESLSAVVLRDLAKARGLKNISGMKKSDLVDLMVAEDERQSKEENTKQREQTSQRE
QTPQREQAQQRPAREPREGRENPKESGAVDETISNLDSGIMANGILEVMPDGYGFIRCEN
YLPGENDVYVSPSQIRKFNLKTGDIVAGNTRVKTQQEKFSALLYVSSVNGYHPGVAQKRK
NFEDLTPIFPNRRIRLERPGCSVAMRIVDLVSPIGKGQRGMIVSQPKAGKTTLLKEIAKS
VTKGNPDMHLIILLIDERPEEVTDIKEAIVGENVEVIYSTFDELPEHHKRVSEMVIERAK
RLVEHGKDVMILLDSITRLARAYNLTVPPSGRTLSGGLDPAALHMPKRFFGAARNMREGG
SLTILATALVDTGSKMDDVVFEEFKGTGNMELVLDRKLSEKRVFPAIDIVKSGTRRDDLL
LEPEEQEAVEIMRKAINGMRTDEAVENILNMFARTRNNQEYIHMVKKNRIV
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgagagaaaagtatgagagcttgtcagccgttgttttgcgtgatcttgcaaaagcgaga
ggactcaaaaatatctccggcatgaaaaagagtgatctggtagatctgatggttgcagag
gacgagcgtcagagcaaagaggagaatacgaagcagcgtgagcagacatcgcagcgtgag
cagacaccgcagcgagagcaggcgcagcagcggccggcgcgggaacccagagagggacgg
gagaacccgaaggagagcggtgcagtggatgagacgatctcgaatctggacagcggaatt
atggcaaacggtattttagaggttatgccggacggatatggatttatccgctgtgagaat
taccttcccggggagaacgatgtgtatgtatcgccgtcacagatccgcaagtttaatctg
aagacgggcgatatcgtggcgggcaatacccgtgtgaagacacagcaggaaaagttttcg
gcgctgttatatgtttcatcggtcaatggttaccatccgggtgtcgcgcagaagcgcaag
aattttgaggatctgacgccgattttcccgaaccggagaatccgcttggagcgcccgggc
tgcagtgtcgcaatgcgcattgtggatctggtatcgccgatcggaaagggacagcgcggt
atgatcgtatcccagccgaaggcaggtaagaccaccttattaaaagagattgcaaaatca
gtgacaaagggaaatccggatatgcatctgattattttgctgatcgatgagagaccggag
gaggttacggacatcaaggaagcgattgtcggggagaatgtggaagtgatttattctacg
tttgatgagctgccggagcatcacaagcgtgtatccgagatggtgatcgagcgggcgaag
cgccttgtggagcacggaaaggatgtcatgatcctgcttgacagcattacgagactggca
agagcctacaacctcacggttccgccaagcggacgtacgttatccggaggtcttgacccg
gcggcgctgcacatgccgaagcgctttttcggtgcagccaggaacatgcgtgagggagga
agcctcacgattcttgccaccgcgctggtggataccggaagcaagatggacgacgtggta
ttcgaggagtttaagggaaccggcaacatggagctggtgcttgaccgcaagctttccgag
aagcgtgtgttccctgccatcgacattgtgaagtcgggaacacggcgcgacgatctgctg
ctggagccggaggagcaggaggctgtcgagatcatgcgcaaggcgatcaacggtatgcgc
accgacgaggcggtggagaacattctgaacatgtttgcccgcacgcgcaacaatcaggaa
tatatccatatggtgaaaaagaaccggattgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (132)   
   KEGG ORTHOLOGY (1)   
   RefGene (129)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (151)   

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